Silurus meridionalis (southern catfish): 124402569
Help
Entry
124402569 CDS
T08004
Symbol
ap5b1
Name
(RefSeq) LOW QUALITY PROTEIN: AP-5 complex subunit beta-1
KO
K19022
AP-5 complex subunit beta-1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124402569 (ap5b1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
124402569 (ap5b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_barrel
AP5B1_N
AP5B1_C
HEAT_ECM29
Motif
Other DBs
NCBI-GeneID:
124402569
NCBI-ProteinID:
XP_046731639
LinkDB
All DBs
Position
19:2368513..2372937
Genome browser
AA seq
935 aa
AA seq
DB search
MTSWDARISSLLFSPTQFLSRTTSEMFLAELLDNLRDDKTNDSKKILLLSVFLEHPTVLC
TTTSAGEQTAHELVSILNCTPQKSVGLKCHLLLAITSVLICTSCLADRTKVAEDYLSFLF
SLIQDTNDNVGGPTHHAVRAGACECLREMETCQPGLLSQKLEALYYLKQQETTVLHQSYC
MLYTEVLKNAIRFLTQEKDVDNAKLRAXLAGNEGFLWKFPQFTKSNLSVSMAQASQLPTT
LDFKELKSIMSLILEESYLMTSPSQAALLRGLVEVVAMVPGISPAIFKSQLLRLFGTTEV
ELMHATLFMKGTFTDSLFTAEDEHFLLKRLVGMAQHPLLRVPEKLFYIDCILHFPENRPI
SSSGEECLPVLITPKLTLSLFPSVFNDSTTMLSRLNLLCLVHLEANEEEDGQGLGYLLNH
VMALLRIVDKNGSRETVVTSFRAIYVFLVHFNHMENLSEKLVHRLRELFSRNCHLAPNLI
NLTDRIQERLEDSLWSVRLLKALQRCIVEMPSLQLTLQSLGWHLKILARVAQESQITQKS
SICFLRDILVNSNLCERRSWHVGTAILAVCRNLLQHPTLNQMFIELADLLQHMSRHYEDT
DIQDHARFYYTLLTNLSWKNLPVXLANAPIGGQAKIRSLSTITANEELGSCSIVLQTESC
IIQLEKISPNDSQDLVQTAEVPTQKDLYEFYQEQLKTPGFASEVTLRYNLTHANLTDPRF
DRIFTICLHFDADMSHYAKVEDIYVPCLFRDRKPQRVSVNLKPYHPYPTRLRVSAIFTTE
DGQSWHTHLPDVRVSFPEIFLPVPLPLGTPPQLKEDMFDRIWDALASGEPSASETSLFCF
KAEGDTLADLIKNFQRYVISQGPNGWKVLFFLPPTFHVLLNIREGEDSVQVSVATDNWEL
LPHVNSYLQSLTVPCNTATDNRSGIEELRGPDIPC
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgacctcctgggatgcaagaatctcctctttattattcagtcccactcagttcttgtct
cgcaccacctctgagatgtttttagcagaacttctggacaatctgagggatgacaaaaca
aatgacagcaagaagatactcctgttgtccgtattcttggagcatcccacggtcctttgc
acgaccacgtccgctggagagcagacggcgcatgagctcgtctctattctcaactgtact
ccacagaaatcggtcggtctaaaatgccacctcctgctggccatcaccagtgttttgatt
tgcacctcgtgcttggccgaccgaaccaaagtcgcggaggactatttgagctttttgttt
tcattgattcaggacacaaacgataatgtgggaggtccgactcatcacgcggtcagagcc
ggggcttgcgagtgtctcagagaaatggaaacctgccagccaggccttctgtctcaaaag
ctcgaggctctttattaccttaagcagcaggaaaccaccgttctgcatcagtcctattgc
atgctctacacagaggtgctcaagaacgcgatccgatttttgacacaagaaaaggatgtg
gataacgctaagcttcgagcgntcttagcgggaaatgaaggctttttgtggaagtttccc
cagtttacaaagtccaacctgtctgtcagcatggctcaagcttcacaactaccgacaacg
ctggacttcaaagagctgaagtccataatgtccttaatcttggaggaatcgtacttgatg
acgtcaccctcacaggccgccttgcttagggggcttgtcgaggtggtagcgatggtacca
ggcatctctccggccatattcaagtctcagttgctcaggcttttcggaacgactgaggtc
gagctgatgcacgccaccctgtttatgaaaggcacgttcacagatagcctctttactgct
gaggacgaacatttcttgcttaagcggctcgtaggaatggcgcaacatccccttctgaga
gttcccgagaagctcttttacattgactgcattcttcactttcctgagaacagacctatc
tctagcagcggagaggagtgcttgcctgtcctcattacccctaagcttactctatccctc
ttccctagtgtattcaatgacagcaccacaatgctttctagactgaaccttctctgcctg
gtacacctcgaggcaaatgaggaggaggacggccaaggtttgggatatctgctcaatcat
gtgatggctctgctcagaatagtggacaaaaacggcagcagggaaactgtggtgacctct
ttcagagcgatttacgtattcctcgtgcacttcaaccacatggagaatctctcagagaaa
cttgtccatcggttacgcgagctgttttccagaaattgtcacctcgcgccaaatctgatc
aacctcaccgaccggatccaggaacgccttgaggattcgctttggtcggtccggttgttg
aaagctcttcaaaggtgcattgtggaaatgccttctttgcaactaacccttcaaagctta
ggttggcatctcaaaatcttggctcgggttgcacaggagagtcagatcacgcagaaaagt
agtatctgcttcctccgtgacatcctcgtcaattcgaacctttgcgaaaggaggagctgg
cacgtcggtaccgctatcctcgcggtatgccgcaatttgcttcagcaccctacgttgaac
caaatgttcattgaactggcagatcttcttcagcacatgtccagacactacgaggacacg
gacattcaagaccacgctcggttttactacaccctccttaccaacttgtcttggaaaaac
ttgccagtgnntctcgccaatgcccccatcggaggacaggcaaaaatccgatccttgtct
accatcactgcaaacgaagaacttggcagttgttcgatagttctccagacggagagttgt
atcattcagcttgaaaagatttccccaaatgattctcaggatttagttcaaactgcagaa
gtcccgactcagaaggacttatacgagttttaccaagagcaactaaaaacccccggcttt
gcctcagaggtcacgttgaggtacaacctgactcacgcaaacctcacggatcctagattc
gatcgtatcttcaccatatgcttgcattttgacgcagacatgtcgcactatgcgaaagtc
gaagacatctacgtgccgtgccttttcagagacaggaagccgcaacgagtcagcgtgaac
ctgaagccgtatcacccgtacccaacaagattacgagtgagcgccattttcaccacggaa
gacggccagtcctggcacactcatctacctgatgttagagtgtcattccctgagatattt
cttcctgtccctttaccgctaggtacaccgcctcaacttaaagaggacatgtttgatcgg
atttgggatgcgctagcatccggggaaccgagcgcttcagagacgagcctcttttgtttt
aaggctgaaggtgacactctagcggatctgattaagaatttccagaggtacgtgatttca
caaggaccgaacgggtggaaggtcctgtttttccttccaccaacatttcatgttttattg
aatatcagagagggcgaggacagtgttcaagtcagcgtcgcgacagacaactgggaactg
ctccctcacgtcaactcctacttacaaagcctaacagtgccctgtaacacagcaacagac
aacagatctggaattgaggagctccggggtcctgatataccttgttag
DBGET
integrated database retrieval system
