Silurus meridionalis (southern catfish): 124402917
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Entry
124402917 CDS
T08004
Symbol
wdr33
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124402917 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeo03019
]
124402917 (wdr33)
Messenger RNA biogenesis [BR:
smeo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124402917 (wdr33)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
eIF2A
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
124402917
NCBI-ProteinID:
XP_046732299
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Position
20:1999568..2020147
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AA seq
1101 aa
AA seq
DB search
MATDIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDLRSVQPDAGCFNDLVPPVGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKNGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPIHEGLFASGGSDGSLLFWN
AGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDMEPNNLATIPGMGIPEQLKAAMEQEQTNKETVPEAEMSIPGLDWGMDE
VMQKDLKKPPTKKVPYAKPIPAQFQQAWAENKVPAMVPGEPPKERKDEKVDLKKKSQAEI
EQEMAALQYTNPMLLEQLKIERMAQLQDQSMPPPGGQPGSMPSFXGQGGPMAPPPQGFPQ
SMPPQQIPPNMGPPMGPGGMPGPYIPPGQMGPPGPLPHQGPPSQGMMGPPDHHGPPRHPG
PHRNMGSHGMPPGPRGMQGPPPGPMASGPPSGNMMGLPPRGQGPPQGGMMHQDMRGPTPH
GNMMGAQGPPPGGMMGPPPRNHGMGNMHGMGPPPGGXHGPPNNMQGPSGNMQGPPYMQQG
KLPHMGEGNRGQFSQGQNSGPQSMMHGPGGKDGPRGPPNHHMGPPHEHQGSDGGSQYWPE
DGGYQESWRRPGQDFHGDPRGHRGGSGGQWENQERFPSHDDDYERFDDGYEGAVDGYDQR
LRRPPHSEDSFRRGGMSGRGGRGSYQDEYGGDESFDSQEEMGQGWGNGGRGRPRGGTPRG
GTPRGGGVGRKGLLPTPDEFAAHYEGGRNQEGWEGGRDSGHEGYREGQRGDHSMHDSPSA
VSRERSSSLQGMDMASLPPRKRPWHDGPGTGDMDSPGAGPDDRGAGRPPPRDDVSYGPPP
SRSSRGGWVRGGRGLRGGRGR
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgacatcggctccccgccgcgcttcttccacatgcctcggttccagcaccag
gcgcctcggcagctgttctacaagaggccggactttgcgcagcagcaggccatgcagcag
ctcacttttgacggcaagcgcatgaggaaagcagtgaaccgaaagaccatcgactataac
ccgtcggtcatcagatacctcgagaaccgcctctggcagcgggatcatcgagatcttcgt
tctgtccagcctgatgcaggttgctttaacgatctcgttcctcctgtcggtatgctcaat
aaccccatgaacgcagtgactacaaagttcgtcagaacatccacgaataaagtgaagtgc
ccagtgtttgtagtacggtggacccctgaaggcaggcggctcgtaaccggggcctcgagt
ggggaattcaccttatggaacggccttacctttaactttgagaccattctacaggcacac
gacagcccggtacgcgcgatgacgtggtctcataacgacatgtggatgctgaccgccgac
cacggcggctacgtgaagtactggcagtccaacatgaacaacgtcaagatgttccaggcg
cacaaggaggcgattagagaggccagtttctctcctacggataataaatttgcaacttgc
tccgatgacggaactgtgcgcatctgggactttctgcgctgccacgaagaaagaatactc
cgaggtcacggcgcagacgtcaagtgtgtcgactggcatcccaccaaaggcctggtggtc
tcgggcagcaaagacagccagcagccgatcaagttctgggatccaaaaaatggccagagt
ctggcaacattacatgctcataaaaacacggtaatggaagtgaagtggaacctgaacgga
aactggctcctcacggcgtcgcgtgaccatttgtgtaaactgttcgacattcgcaacctg
aaagaagagctgcaggtgttcagaggacacaaaaaggaagctacagctgtcgcctggcac
ccgatccacgagggtctttttgcgagcggaggctctgacggatcactactcttctggaat
gctggagtggagaaggaggtgggtggtatggagatggctcacgagggtatgatctggagc
ttagcctggcatcctctcggccacattttatgctcagggtctaatgaccacaccagcaaa
ttctggacccgaaatcgtccaggagataaaatgcgtgaccggtacaacctaaatctccta
cctggaatgtcagaggatggagtcgaatatgacgacatggagcccaacaatctggccacc
attcctgggatggggatcccggagcagctaaaagccgccatggagcaggaacaaactaac
aaagagacagtaccggaggctgagatgagcatcccagggctggattggggaatggatgag
gtgatgcaaaaagacctgaagaaacccccaacaaagaaggttccctatgcaaagccaatt
cccgctcaattccagcaggcctgggcagagaacaaggtaccagctatggttccaggggag
cctcccaaagaaaggaaggatgagaaggtggatctcaagaagaagtctcaggctgaaatc
gagcaggagatggctgcactgcagtacacaaaccccatgctgttagagcaactgaagatt
gagcgaatggcccaactccaggatcagagcatgccacctcctggaggtcaaccaggctcc
atgccatccttcnctggacaaggaggccccatggcaccgcctccacagggctttccacag
tcaatgccaccgcaacagattcctcccaacatgggccctccgatgggtccaggtggcatg
cctggtccgtatataccaccaggtcagatgggacctcccggtcctctgcctcaccagggt
cctccttcgcaaggcatgatgggacctccggatcatcacggacctccacgccaccctgga
ccccacaggaatatggggtctcatggaatgcccccagggcccaggggcatgcagggtcct
cctccaggtccaatggcttcaggaccaccttcaggaaacatgatgggacttccacctcga
ggtcaagggccaccccagggtggaatgatgcaccaggacatgcgtggaccaacacctcac
gggaacatgatgggtgcccagggccctccaccaggaggaatgatgggacctccacccaga
aatcacggcatggggaacatgcatggaatggggcctcctcctggaggantgcacgggcct
ccgaacaatatgcagggtccatcgggtaacatgcaaggacctccttatatgcagcagggc
aaactgccacacatgggcgaggggaatagaggacagttcagccagggacagaattctggc
ccgcagtcaatgatgcatggtcctggtggaaaagatggacctcgagggcctccaaaccac
cacatgggacctccacatgaacaccagggatcagacggaggttctcagtactggccagag
gatggaggctatcaagagagctggaggagaccaggacaggacttccatggagatcccagg
ggccaccgaggaggttctggaggacagtgggaaaaccaggagaggttcccttctcatgac
gatgactatgaaaggtttgatgatgggtatgagggtgcggtagatgggtacgaccaaagg
ctgagacgaccaccacattctgaagattctttcaggagaggtggaatgagcggacgcgga
ggcagaggaagttaccaggacgagtacggaggagacgagagctttgattctcaggaagag
atgggccagggctgggggaatggagggagagggaggccgcgtggaggaacaccacgtgga
ggaacaccacgtggaggtggtgtaggaagaaaggggcttctgccaactcctgatgagttt
gcggctcactacgaaggaggaagaaaccaggagggttgggagggagggcgagactcaggt
catgagggctatcgggaaggccagagaggtgaccacagcatgcacgacagcccgtctgca
gtcagcagggagcgctcttcttcactacagggcatggacatggcctcactcccacctcgc
aagcgtccctggcatgacggcccgggcacgggagacatggactcacctggagctggacct
gatgaccgaggggcaggtcggcctccaccacgtgacgacgtcagttacggtcctcctcca
tccagaagcagtagaggagggtgggttcgcggtggccgtggactgagaggaggccgggga
cggtag
DBGET
integrated database retrieval system
