Silurus meridionalis (southern catfish): 124402997
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Entry
124402997 CDS
T08004
Symbol
alms1
Name
(RefSeq) LOW QUALITY PROTEIN: Alstrom syndrome protein 1
KO
K16741
alstrom syndrome protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smeo03036
]
124402997 (alms1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
smeo03037
]
124402997 (alms1)
Chromosome and associated proteins [BR:
smeo03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
124402997 (alms1)
Cilium and associated proteins [BR:
smeo03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
124402997 (alms1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
124402997
NCBI-ProteinID:
XP_046732474
LinkDB
All DBs
Position
2:20361981..20373573
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AA seq
2092 aa
AA seq
DB search
MKQAAERFESLQLEQQDSCLSPALTLIPLGKTFLPSESTLLHQTDLEFLPLRGSPDVSAA
SERCPQMSRLIVDGEADPLNRSHDQASLSQHHLGVMSAIIEDVSSCCSLSQHSLSPSSNY
QATHNHYQHLEMDLGVASRSAVPSSTEIVLSQTDAALSSTDYPKQSFLVLKDDPACFPKK
ESQFRPSESREQPQAGSSFLMPQRKSVSLSSNLSAISNITVRATSKQTLDTTDLHLKQHQ
IHGDSLLSILGGRDQTENNNTSTGHNITPTSEGGVHGAGLQRELWSSGRYKATDGSFLTS
QPVFQSTPSVLFYRGAPAPAKLSPVYSHQDTVATSTQHSPKPDDIPPLTLSTSSHPSGAG
AALATSLDPGDAHTESYLPRETPHSQETPSLVLDVPVATCEDTPLNQPTLTTLMPTSNKQ
LKDQETKLSAGRVHSLPSLSYVQKVDAWKANQSSSGSFYDSLSLHGLNGGVPFKRNEQDS
VSEAEKQQSQQQPKKTASAFSASNNTLPTQTGSGLLPSVDVEEAGGAVRSISPSPFTHSH
SQSSLGTVITPIQQDELQQHVNQLPLEHTDTISPCVKSTAAESLQSLSETNNQQPAKEPG
TSPLKNPALLNLDQYSGMNTNSNRSNTVSSFPAGYHLEQSFQASIGASSVVSLEVDNYAP
YWTSRPGSPPHPSEFNIEDRIPLYLHNLGIDQSPSTILNPFTRRGPIREPEFSPTDLCTI
KGSVGSPTKSIQPSDADSLQKETFSSSSVLSAESNASLTQLFIPKSIVQPTRPSSSGSIR
KAHFQQSTLSQPHTPPYSVSQEVDTSQREGSYGLPAQVSLDSTPAPAPGTWEGVKEGDSS
LVGSGTLQEIRRLLGHAESLVSSHFSVTSSPGSHCYPESDTSFLSLRQNTQAYNDDSFLS
VDRGFFGTSSLFLRLRPKGELVILIWASRDVHKFGSHEQRASTPSQGKEENLKSRDFRVA
PRRAEPEGCSAADPDRAGPVTVSITQGNASTSDGEQQSLDHTENVAISSSEISLTHSQTE
AEKGVLSDASSEHSLASRVAKLLQSESSVSVVTSRSSTADPDESRAREWLINKVSGGKCE
LNSEDRRRIEEIKRDLLLHTKSSSASESSSQSSAGTVPQPAVGFAAVRSAEDRLSEQLQR
LSRIPLDSSVPLHTPVEDGVSQIPIKERRDLQHTHSPHSSQHLYINNGHAVHNDNVLESN
SYPTPRSSDVWKLQTKMTNRSTKSEVGNGTAEKEKELRGEDVHAENEKNKTLPVTEAAHT
VIRGTREFTPGLESGSVIGYKPHPNSQPTPSVKLQQNTTQRPDTPVSDSGELVTGSPTHH
SNGPYSSREVPVSNTNKQQQVSIATETNLSKDRNADQYQNIGVVHGNSQMTSRHKENRQA
APNMPFFVSTAANSTLLPYKPHGSSELFYMAQTVREFSPNHSDSAVESSHPGSDDAVPPQ
FTPEVLGSRELVDNYVTPKHKEGIYSKRAKMKRASNLSGNGVYNQIGNTGPPGQLTGYRK
SVFPENKQVPEHIEEEEEEVFIPLHMEANISTAEQHINCSAQHHNLGTESLPLLSKAIRE
KEQDQMVHNIGAEIGNSLDQLWHRFNERYSFQETQTRSDVEISLLERLERLSRLLQSSSP
PHKPKQGHSTVEKSKSRRRETEPRRTLPKKHTAKYGKEKNAPKTAWEMKPLSTNQTAVEE
KLRNQNYRFPAERDESASVSVETSSCQSTIDTPRLIRAFGPDRVSSGREVVAGSQALKPS
DVLLKLHNNIKKQKRGHDSSGSESHLVSVATDDSMASDTLSSSSTCTQRSQRSTGCNTSS
KMAKVKLVSRSIQAGDLEIVVNGTRRDTRDVGTTFPSPSSAKVTRASSGACSEVKTNKPR
APSTSAVQTQSDLRRHMLKKQTCYPNGLSWFVPADDLKWDARKENKPQTDAGQSESQAWF
EPHTRTQPWRAPLRERHIQVEKGKPPEQKTHPENNYSRKSPALVRLTLQEALELHRPEFV
SRSRERMKRLCLLAEERKIQAVFNKEREELFNRPSTLQQPKAPAPPPLLSKRVIPISEMI
QRSKRIYAQLPEVQKRKEEEKRKAEYYTYRLNAQLFNKKITNHVLGRRAPWQ
NT seq
6279 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaagcagctgagagatttgaatctttacaactagaacagcaggatagctgttta
tcgcctgcactgacgttaattcctctaggaaagactttcctgccttcagagtccacactc
ctccatcagacagatttagaatttcttcccttgagaggatctcctgatgtgtccgctgct
tcggagaggtgccctcagatgtcacgcctaattgtggatggagaggctgacccattaaac
agatcccatgaccaggcctcactatcacaacatcatttaggtgtgatgtctgcaattatt
gaggatgttagtagctgctgctcactatcacagcacagcctgtcacctagtagcaattac
caggcaacgcacaatcattatcagcacctagaaatggatcttggtgtagcaagtaggagt
gcagtcccctcttccactgagattgttctcagtcagacagatgctgccctaagctcaaca
gactatcctaaacaatcctttcttgtcctgaaagacgatcctgcatgttttcctaaaaag
gaatctcagtttagaccttctgaaagtagagagcagccacaagctggctcttctttttta
atgccgcaaaggaagagcgtctcactttcctccaatttgtctgccatctcaaatattaca
gttcgtgccacaagcaagcaaacacttgacaccactgaccttcacctcaagcagcatcag
atacatggtgattcattattatccatactaggaggtcgagatcaaactgagaacaataac
acttcaactggacacaatataactcccactagtgaaggtggtgtacatggggcagggcta
cagagagaactttggagctcaggtagatataaagccacagatggttcctttttgacctct
cagcctgtgtttcagtccacaccttcagtactcttctatagaggagcaccagccccagcc
aaactctctccagtatattcccatcaagacaccgtggctacatcaacccaacacagccct
aaaccagacgacataccaccattaactctaagtacctcaagtcatccaagtggtgctgga
gctgcacttgctacttctttggacccaggagatgctcatacagagtcataccttccacgt
gaaacacctcatagtcaagaaaccccttccctggtattggatgtgcctgttgccacctgt
gaggatacaccccttaatcaacctaccctaaccacactcatgcccacatctaacaaacag
ctcaaagaccaggagactaagctgtctgcaggaagagtccattctctccccagtctcagt
tatgtacagaaggttgatgcttggaaggccaatcagagttccagcgggtcattttatgac
agtttgtctctccacggtttaaatggtggtgtaccttttaagaggaatgaacaggactct
gtgtctgaggcagaaaaacaacaaagtcagcaacaacccaaaaagacagcctcagcattt
agtgccagtaacaacactctacccacacagacaggcagtggtttgctgcctagtgtagat
gtggaagaggcaggtggagctgtaagatcaatttcaccatcaccatttacacattctcat
tcccagtcatctcttggaacagtgatcacccctatccagcaagatgaactgcaacaacat
gtaaatcagcttccccttgaacatactgataccatctctccatgtgtcaaatccactgca
gctgaatcattacagtccttgagtgaaacaaataaccagcagccagctaaagaacctgga
accagtccattaaagaaccctgctttgctgaatctagatcagtacagtggcatgaacaca
aattccaacaggagcaacacggtttccagttttccagctgggtaccatcttgagcaaagc
tttcaggcatccataggtgcctcctctgttgtaagtcttgaagtggacaactatgcaccg
tactggacctccagacctggatcccctcctcatccctctgagtttaatatcgaagataga
atccctctttaccttcacaatttgggaattgatcagtcaccttcaacgatcttgaatccc
tttacacgccgtggaccaatcagagagcccgaattttctcctactgatttgtgtactatt
aaaggctcagtaggatcacccaccaagagcatacaaccatctgatgctgacagccttcag
aaagagacattctccagttccagtgtgctttctgcagaatccaatgcctctttaacacag
ttgtttattccaaagtctattgtgcagccaaccagaccatctagttcaggcagtataaga
aaggcacacttccaacaaagcactttatctcagccccatacaccaccatacagtgtttct
caagaagttgacacttctcagcgagagggcagttatggcctgccagctcaggtgagcctg
gattctacacctgcacctgctcctgggacttgggaaggtgttaaagagggagactcatct
ctggttggttctggaaccttgcaggagatcaggcgtttgctcggccatgcagaaagcctg
gtgtctagtcatttttctgtcacctcctcccctggctcacactgttaccctgagagtgat
acctcttttttgtcactcaggcagaacacacaagcatataatgatgattcatttttgtca
gttgatagaggtttctttggtactagctcgctcttcctcagactccgccctaaaggagag
ctcgtcatcctcatctgggcctctagagatgtccacaaatttggctcacatgagcaaagg
gcctcaacaccctctcagggcaaggaggaaaatctgaagtcacgtgacttccgtgtggct
ccacggagagcagagcctgagggatgcagtgcagcagacccagacagggcaggtccagtg
accgtgtcgattacacagggaaacgcttcaacatcagatggcgagcagcaaagcttggac
catacagaaaatgtagccatcagttcatctgaaataagtctcacccacagtcaaacagag
gcagaaaaaggtgttttaagtgatgccagcagtgagcattcactggcttctagggtcgct
aagcttcttcagagcgagtcgtctgtctctgttgttaccagccgctcaagtactgctgat
cctgatgagagccgagcaagagagtggctcattaacaaggtctctggtggcaagtgtgaa
cttaattcagaggacagaaggagaatcgaggagattaaaagagatctcctgctacacact
aagtcgagttcagcttcagaaagcagttcccagtccagtgctggcactgtacctcagcct
gctgtaggttttgcagcagtgcgcagtgcagaagatcgcctctctgagcagctgcagaga
ctcagtcggattccactcgactccagtgttccactgcacacaccagtggaagatggagta
agtcagattcctatcaaggagaggcgtgaccttcaacacacacactcgcctcattcgagt
cagcacctctacataaacaacggccatgctgtacacaatgacaatgtgctagaaagcaac
tcgtacccaaccccgaggtcttctgatgtatggaagctacagactaaaatgacaaataga
tcaacgaagtctgaagttgggaacgggacagcggaaaaggaaaaagaattaagaggggaa
gatgtgcatgcagaaaatgagaaaaacaaaaccttaccagtcacagaggcagctcacact
gtcatcagaggaacacgagagttcaccccaggcttggagtcgggttcagtcattggttat
aaacctcaccccaatagtcaacccacaccttcagtgaaattacagcaaaacaccacccaa
agacctgacactcctgtcagcgattctggagagctggtgactggatctccaacacatcac
tcaaatggtccctattcctcaagagaagtcccagtctccaataccaataaacagcaacaa
gtctctatagccactgagaccaatttaagcaaagacagaaatgcagaccagtaccagaac
ataggagtggttcatggaaattcacagatgacctccagacacaaggaaaatagacaggct
gctccaaatatgcctttttttgttagtactgctgcaaattcaactttattgccttacaaa
cctcatggcagttcagagctcttctacatggcacagactgtccgtgagttctcccctaat
cactctgattctgcagtggagagctcccacccaggttctgatgacgctgtgccccctcag
ttcacccctgaggttttgggatccagagagcttgtggacaactacgttacaccaaaacat
aaggagggtatttacagcaagagggccaaaatgaaacgagcatcgaatctgtctggaaat
ggcgtttacaaccaaattggcaatactggtcctcccggtcagcttactggttacagaaag
tctgttttccctgagaataaacaagtgcctgagcatatagaggaggaggaggaggaagtg
tttatccccctgcacatggaggctaacatcagtacagctgaacaacatattaactgcagt
gctcaacatcataacttaggaacagaaagtctacctttactttctaaggccattagggag
aaggagcaggaccagatggttcataacattggtgcagagattggcaactctctggaccaa
ctttggcatcgtttcaatgagcgatacagctttcaggagactcaaaccaggagcgacgta
gaaatatcactgctggagagactggaacgcctgtctcgcctcctacaaagctcctcccct
ccacacaaacctaaacagggacacagtacagtggagaaaagcaagagtaggagaagagag
actgagccaaggagaacacttccaaaaaaacatactgccaaatatggaaaagagaaaaat
gctccaaaaacagcatgggaaatgaagcctttaagtaccaaccagaccgcagtggaggaa
aagttgcgaaaccaaaattatcgctttcctgccgaaagagacgaatctgccagtgtttct
gtggagacgagcagctgccagtctaccatcgacacaccacgcttgatcagagctttcgga
ccagacagagttagcagtgggagagaagtagtggctggaagtcaggcactaaagcctagt
gatgtcctattgaaacttcataacaacattaagaaacagaaaagaggacatgacagcagt
ggctctgaaagccatctcgtttctgttgccaccgatgattccatggcttcagacacatta
tcatcttcaagcacttgtacccaacgctcccaaagaagcactgggtgcaacactagttct
aagatggcaaaggtcaaactggtcagcagaagcatacaagctggtgatttggagattgta
gttaatggcacccgtcgagacacacgggatgtaggcactacatttccatctccaagtagt
gccaaagtcaccagggcatcttcaggagcttgtagtgaggtaaagaccaataagccaagg
gctcccagtacatctgctgttcaaacccaatcagatctgaggagacacatgctcaagaaa
cagacctgctacccaaatggtttgtcatggtttgtacctgctgatgacctaaagtgggat
gcacgaaaggagaataaaccccaaacagacgcagggcagtctgaaagtcaagcatggttt
gagccccacaccagaactcagccatggagagcgcctcttagagaacggcacattcaagtg
gaaaaagggaagccccctgaacaaaaaacacatccagagaataattacagcagaaaaagc
cctgccttggttcgtctcaccctgcaggaggcactggagttgcatcgaccagagtttgtg
tcccgttctcgggagcggatgaaaaggctgtgcctgctggctgaggaacgaaagatacaa
gccgtcttcaacaaagaaagagaggagctttttaaccgcccatcaactctgcagcagcca
aaagcaccagctcctccacctcttctttctaagcgagttattccaataagtgagatgatt
cagagatctaagcggatctatgctcaactcccagaggttcagaagaggaaagaggaagaa
aaaaggaaagcagagtactacacttaccgccttaatgctcagctatttaacaagaaaatc
accaaccatgtgctaggaagaagagcaccttggcagtag
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integrated database retrieval system
