Silurus meridionalis (southern catfish): 124403319
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Entry
124403319 CDS
T08004
Symbol
trpa1a
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1a isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
smeo04040
]
124403319 (trpa1a)
Ion channels [BR:
smeo04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
124403319 (trpa1a)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
124403319
NCBI-ProteinID:
XP_046732955
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Position
20:18031841..18048103
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AA seq
1103 aa
AA seq
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MRLSRSQPKFTHEYQSLMDMDKKSCTSMSVFELALEGNAPALEGHSSNLGTRDAGGATPM
HYASSKGHTRVINLIIHIAGPQELDVVDDEGNTPLHWAVQQDQHGSCSTLLSLGANPNIL
NRASLSPLHLAASLRHNHILEQLLTHSQTNVNLEGDLGNTPLILAASVDNHEALLTLHRN
GARLFCQNMLGHFPIHAAAFAGAKKSMEVVLQKGEETGVPIERHINYLDKSISTPLHLAV
RGGNLEVIKLCIAHGAKIDQQQCDKSTALHFACTQGAIEAVKVMLQAYERVCDIINITDG
AFQTPLHKAAIFDHYDLVEYLISQGADIDFTDCKGHSPLLLATSCGAWRSVNLLLSHGAD
LTVKDKAGCNFLHLAILQPRGLKNLPAEVLQNESARDLLNDEDAEGCTPLHYACRLGIPD
SVKNMLGLEVSLDQKSKQKKSALHFAAEYGRINTCHRLLETMTDTRLLNEGDEKGMTPLH
LASHGGHVKVVELLLRKGALFHSDYKGWSCLHHAAAEGFTQTMDSLLIANIKLLDKTDCD
GNTALHLAARAGHVAAVRLLLSRGAQILLNRSDATFLHEAIHNGRKDVTIAVIDSDRCEE
AFTMFKVNSAKRCPVLDMIEFLPECVKHLLDTCIKESEEDVNSSNYYLEYNFQWLQQPIQ
YAKKSEQTENGDTYKPLAALNAMVQFNRVDLLTHPVCKKYLEMKWHAYGVKAHLLNMTMY
TLGVFPLTYLIVNLRPNLNVERNIRTINMVTKSLNKQSYFITTCMFLVLTMNLYAVGKEV
VQMFQQRLKYLQDRSNVMDWAATICSLLFVVPLLMNVKNSWHWQAGALASLASWVNLLLY
MQRFQRFGIYVVMFREICKTLLSIILIFVYLILAFALAFNALMIEQRHFGRLFLSLMQTF
AMMAGEINYQDNFLKPYMNKHLPFPVLTYFVLIWFVLLVPILLMNLLIGLAVGDIAEVKN
NACLKQIGMQIELHTNLEERLPYWFMKRIDQIAIKEFPNKCYHGRKWFSCRGEVNRVRAR
LSSSTRQCTQLERELTKQKHRLKDLSELMEKQHTLLKLVVQKMEISSEAEEHDGPRIVRD
FTHKLSTRSKWGPLLRAVTAKRK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgcgtctgtccaggtctcagccgaagtttacgcacgagtaccagagtctgatggacatg
gacaaaaagagctgcacatcaatgagcgtctttgagttggctttagagggcaatgcccca
gctctggaggggcactcgagtaacctgggcacacgggacgctggcggtgcgacgccgatg
cattatgcctcctccaaaggccacacccgagtcatcaacctcatcatccatatcgccggc
cctcaggagcttgatgttgtagatgatgaagggaacactcctttgcactgggctgttcag
caggatcaacatggaagctgttcaacactcctgagtctcggggcgaatcccaacatcctg
aacagagcgtctctctcacctctgcacctcgctgccagcctcagacacaaccacattctg
gagcaactcctgacacacagtcaaacgaatgtgaacctggagggcgacctgggaaacaca
cctttaatcctggctgcttcagtggacaatcacgaggcacttcttacactgcacaggaac
ggagccagactcttctgccagaacatgctgggtcacttccccatccacgccgcagccttc
gccggagccaagaaatccatggaagtggttctccaaaaaggagaggagacgggcgttcct
atcgagagacacattaactacctggacaaatccatcagcacgcctcttcacctggctgtt
cgtggaggaaacctcgaggtcatcaagctctgcatcgctcacggagccaaaatcgaccag
cagcagtgtgataaatccacagctctgcacttcgcctgcactcagggagccatcgaagcc
gtcaaggtgatgctccaggcgtacgagagagtgtgtgacatcatcaacatcaccgacgga
gcattccaaacaccgcttcataaggcggccatttttgaccactacgacctggtggagtat
ctaatctcacagggtgctgacatagacttcactgactgtaaaggccactcgccactactg
ctagcaaccagctgcggcgcgtggagaagcgtgaacctgctgctgtcacacggtgctgat
ctgacagttaaagacaaagcaggatgtaacttcctgcatctcgccatcctgcagcccaga
ggtctgaagaaccttccagctgaagttctgcagaacgagagtgcaagagatctgctgaat
gatgaagatgcagagggctgcactcctcttcactacgcctgcaggctgggaatccccgac
tcggtgaagaacatgctcggcctagaggtctcacttgaccagaagtccaagcagaagaaa
tcggccttacactttgcagccgagtatgggaggatcaacacgtgccaccggctcctggag
accatgacagacacgcgtctgctaaacgagggtgatgaaaagggcatgacaccgttacac
ctggcttcacatggtggtcacgttaaagtggtcgagctgctcctcagaaaaggtgctctg
ttccacagcgattataaaggctggtcctgtttacatcacgcagcagctgagggcttcacg
cagacaatggacagcttactcatagccaacatcaaactcctggacaagaccgactgtgat
ggaaacacggcgctgcatttagctgcgcgagccggacacgtcgctgccgttcgcctcctg
ctgtccagaggagctcagatcctgctgaaccggagtgacgccaccttcctgcatgaggcc
atccacaacgggaggaaagacgtcacgattgccgtgatcgacagcgacaggtgcgaggag
gccttcacgatgtttaaagtaaactcagccaagcgctgccctgtactggacatgatcgag
tttctccctgaatgtgtcaagcatctcttagacacctgcattaaagagtcagaggaagac
gtgaactcctccaactactatctggagtataatttccagtggcttcagcagccgatacag
tatgctaagaagtcagagcaaacagagaatggagacacgtacaaacccctggctgctctg
aacgccatggtgcagttcaatcgtgtcgatttactgactcatccagtgtgcaagaaatat
ctggaaatgaaatggcatgcgtatggtgtgaaagctcacttgctcaatatgaccatgtac
acgctgggagttttcccactgacctacctgatcgtcaatctgcggcctaatttgaatgtg
gaaagaaacatcagaaccatcaacatggtcaccaaatctctcaacaagcaaagttacttc
atcacaacctgcatgttcctggtcctgacaatgaatttatatgctgtgggtaaagaagta
gttcagatgtttcagcagaggttaaagtacctgcaggaccgatcgaacgtgatggactgg
gctgcaaccatctgctctctgctcttcgtcgttcctctcctgatgaacgtaaagaattcg
tggcactggcaggctggagctttggcgtctctcgcctcctgggtcaacctgctcctctat
atgcagcggtttcagaggtttgggatctacgtggtgatgttccgggagatctgcaagacg
ctcctgagcatcattctgatcttcgtttatctgatcctggcgttcgctctggccttcaac
gcgctgatgatcgagcagagacattttggacgtctgtttctttccttgatgcaaacgttt
gctatgatggcaggtgagatcaactaccaggacaacttcctgaaaccttacatgaataaa
caccttccgttccccgtgctgacatacttcgtcttaatttggttcgtcctgctggtgccg
attctgctcatgaacctgctaattggtttggctgtgggagacatcgctgaggtgaagaac
aacgcctgtctgaaacagataggaatgcagattgaacttcacactaatctggaggagcgt
ctgccgtactggttcatgaagagaatcgaccaaatcgctattaaagaatttcctaacaag
tgctaccatggcaggaagtggttctcctgtagaggtgaagtaaaccgcgtcagagcacga
ctgagttccagcacacggcagtgcacacaactggagagagaactcaccaagcagaaacac
agactaaaggacctttctgagctgatggagaagcagcacaccctgctgaagctggtcgta
cagaagatggagatcagttcggaggcggaggaacacgacggtcctcgaatcgtgcgcgac
ttcacgcacaaactcagcactcgcagcaagtgggggccgttactgcgtgccgtcacagcc
aagaggaagtga
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