Silurus meridionalis (southern catfish): 124403373
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Entry
124403373 CDS
T08004
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo03030
DNA replication
smeo03410
Base excision repair
smeo03420
Nucleotide excision repair
smeo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124403373 (lig1)
03410 Base excision repair
124403373 (lig1)
03420 Nucleotide excision repair
124403373 (lig1)
03430 Mismatch repair
124403373 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smeo03032
]
124403373 (lig1)
03400 DNA repair and recombination proteins [BR:
smeo03400
]
124403373 (lig1)
Enzymes [BR:
smeo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124403373 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
124403373 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
124403373 (lig1)
DNA replication proteins [BR:
smeo03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
124403373 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
124403373 (lig1)
DNA repair and recombination proteins [BR:
smeo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
124403373 (lig1)
NER (nucleotide excision repair)
Other NER factors
124403373 (lig1)
MMR (mismatch excision repair)
Other MMR factors
124403373 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
124403373
NCBI-ProteinID:
XP_046733048
LinkDB
All DBs
Position
20:complement(10530780..10549193)
Genome browser
AA seq
972 aa
AA seq
DB search
MQRSIASFFQPMKCKKDDKPKEKSELAKSPLKPQNIDQKCDSPVKMSKRSRAIIDSDDEE
QVVVREEDPKQNGKHTATPGKEKAEDMTSPQSQKPLVSPTTPTVSGSCSTPEMPVTPNST
SPSGIPKRKTARKQFPKRKLDNRSFGEREKGDEEKDTEEGQDSKRAKMEGSPEMKGNNEE
AMEVEPNYRNSTGKDLLKTKDEGNMENENQSDEKETEQKGKKQETLRKNNETRTFAKEEK
SSPKRVLKKEKHAEEETWEGSAKKKNFSSFFAPRKAAVKLEKSDEKNEVEKKDGEKLEAS
SASENKEKKSEKDMGPANQSQYDPSKAHYHPIDDACWRRSQRVPYLAVARTFEKIEEDSS
RLKNIETLSNLLRSVILLSPDDLLCCVYLCLNQLGPAYQGLELGVGETVLMKAVAQATGR
QLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPANLTAAGVFSKLKEIANMSGNSAMNKKI
DIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQEFPPAVIDAG
RGMSSEGRRTWLDEKGHILKQTYCEMPNYDVIIPVMLNLGIDELPNHCKLTPGVPLRPML
AHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILQSGEVRIFSRNQEDNTSKYPDIISR
IPQIKKESVLSCVLDTEAVAWDREKKQIQPFQVLTTRKRKDVDASDIKVQVCVYAFDLLY
LNGESLVREPLSKRRDLLRQSFIEKEGEFVFARSLDSDNTETIAEFLEQSIRDSCEGLMV
KTLEKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSYGGFLLGCYD
EENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILSKPRPYYRIDQSAEPDVWLDAVQVWEV
KCADLSLSPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQIADLYRKQQQIQ
NQGEKADLEDYY
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatagcgtccttttttcagccaatgaagtgtaagaaggatgacaagccc
aaagaaaaatctgagttagctaaaagccccctcaagcctcagaacattgatcagaaatgt
gattccccggtgaagatgagtaaacggagccgagcaatcatagacagtgatgacgaagag
caggtggtggtaagagaagaggatccaaaacaaaatggaaagcatacagccacacctggc
aaagagaaggctgaggacatgaccagtccacaatcacaaaagcccctcgttagccccaca
acccccactgtttcaggatcttgtagcacccccgaaatgcccgttaccccgaattccact
tcaccctctggcatcccaaaacgcaagactgctcgtaagcagttccccaagaggaaattg
gacaacaggagttttggagaaagagaaaaaggggatgaagaaaaagacactgaagaagga
caggacagtaagcgagcaaaaatggaaggatctcctgaaatgaaggggaataatgaagag
gctatggaggtcgagccaaattacagaaattcgacagggaaagatctactgaaaactaag
gatgaaggtaacatggagaatgaaaaccagagtgatgaaaaggaaactgaacagaaagga
aagaagcaggaaacactcaggaagaataatgaaacaagaacatttgcaaaggaggaaaaa
tccagtcctaaaagagtactgaagaaagaaaaacatgcagaggaggagacgtgggaagga
tctgccaagaaaaaaaattttagcagtttttttgcacccagaaaagctgcagtgaagctg
gaaaaatcagacgagaaaaatgaggtagagaaaaaggatggtgagaagcttgaggcttct
tctgcttctgagaacaaggaaaagaagagtgagaaggacatgggacctgcaaaccagagt
caatatgatccttcgaaagctcactaccatcccattgatgatgcttgctggaggaggagc
cagagggttccatatctggctgttgctcggacctttgagaagattgaagaagattcaagc
aggctgaaaaacattgagactctatccaaccttctgcgctctgttattctactctctcca
gatgacctgttgtgctgtgtgtacctgtgtctgaatcagcttggccctgcctaccagggg
ctagagctaggtgtaggggaaacagtattgatgaaggctgttgcccaggcaactgggcgt
cagctggataaaatcaaggctgaagcccaggaaaaaggtgacctgggattggtagctgag
agctcccgcagcaaccagagaatgatgtttgcaccagcgaatctgactgcagctggcgtg
ttcagcaaactgaaggagattgctaacatgagtggcaattcggcaatgaataagaagatt
gacatcattaagggtctgtttgtggcttgtcgtttctcagaggccagatacattgtacgg
tcattggcaggcaaactaaggattggcttggcagagcagagcgttttagcagctctgagt
caagcagtatgtctgactccaccaggtcaagaattcccaccagccgtgattgatgcagga
aggggaatgagttcagagggtaggagaacatggcttgacgaaaaaggacatatccttaaa
caaacttactgtgaaatgccaaattatgatgtcatcatccctgtcatgttgaatttgggc
atagatgaactacctaatcactgcaaacttactccaggtgtgccactgcgccccatgttg
gcccacccaactaagggagtaggagaggtgatgaaaaggtttgatgaggctgcttttacc
tgtgaatacaagtatgatggagaaagagcacagattcacattcttcagagtggtgaggtt
cgtatctttagccgaaaccaagaggacaacaccagcaaataccctgacatcatttcaagg
atcccacagataaagaaggagtctgttcttagctgtgtgttggacacagaggcggttgca
tgggacagagagaaaaagcagattcaaccctttcaagttcttactacacgcaaaaggaag
gatgtggatgcatctgatattaaggtgcaagtttgtgtgtatgccttcgaccttctgtac
ttaaatggagagtctctggtacgagagccactgagtaagcgtcgagatttgttacggcag
agtttcattgagaaggagggagagtttgtttttgctcgttctcttgactctgataacact
gaaactatagcagagttcctggagcagtccatacgagactcgtgtgaaggcttaatggtg
aagaccctggagaaagacgccacttacgaaattgccaaacgctctcataactggcttaag
ctgaagaaggactatctagaaggtgtaggggacacagtggatctgtgtgtgattggggcc
tatttagggaagggcaagagagctggtagctatgggggtttcctacttggctgctatgat
gaggagaatgaggagtttcagtctgtctgtaagattggaacaggcttcaaagatgaagat
ctggagcagcattacaattttttaaaggaacacattctgtcaaaaccccggccctactac
agaattgatcaatcagcagagccagatgtttggttggatgctgtacaagtgtgggaagtg
aaatgtgctgatctgtcactgtctccagtttacaaggcagcaatgggattggtggaccca
gacaaagggatttctcttcgatttcctcgattccttcgcatcagagatgacaaaaaacca
gaagatgctactacaggagcacagattgctgatctctacagaaagcagcagcagattcaa
aatcaaggtgaaaaggctgatttagaggattactactga
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