Silurus meridionalis (southern catfish): 124403447
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Entry
124403447 CDS
T08004
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
smeo03000
]
124403447 (prdm1a)
Transcription factors [BR:
smeo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
124403447 (prdm1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
DUF3727
DUF6761
STL11_N
Zf-C2H2_ZNF451
Motif
Other DBs
NCBI-GeneID:
124403447
NCBI-ProteinID:
XP_046733156
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Position
20:16556050..16569992
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AA seq
752 aa
AA seq
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MCGWNQSLSAASQHSSVMLTTEGALNTADQEERKMTVEDADMSKWTEAEFEEKCTYIVKD
HTWDSPEKPDLPRAQTSLPRNLAFRYAPDSKEVIGVVSREYIPKGTRFGPLVGESYTAEN
VPKDANRKYFWRIYTKGEFHHFVDGLDEEKSNWMRYVNPGHSQQEQNLAACQNGMSIYFY
TVKAIPADQELLVWYCTDFAHRLHYPPSGDLMMQKLKQSLIESKQQVSEEKPVVKREHTV
SEILKDTWREPARPLPTRPHCPISPDRPIYPRVIYPIRPQPHLREDVMKTSPSICFSTRS
PALSSATPSPSARSSPETSPGSSPTPADPRDALPLYNGGLGLYPGYSPSNSLSSFYHSSH
YVLSPYSMSGTPPVGNVFSRMYPLYNSLMTPHMPFPPNMLPPEGGRHFLLPPHRDFLLPP
PKSAFSRATTPKDKPLHGHPRAPISGSPTAGSAVSADQQPANPTSAQPSIRHLEDEAINL
SKMKRGPAGYKTLPYPLKKQNGKIKYECNVCSKTFGQLSNLKVHLRVHSGERPFKCQTCN
KGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKLCPAKFT
QFVHLKLHKRLHTRERPHKCPHCHRNYIHLCSLRLHLKGYCLAAMTSPHCSLEELNRINE
EIERFDISDNADRLEEIEGVDVERLVEKQIFSLICHEMDLKTSYHKGSTGGDLLHPSHPS
STFGLYEPSSETSVIKLLPVKVKQETVESMEL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggctggaaccaaagtctgtcggccgcctctcagcatagctccgtcatgttgacc
actgagggcgccctgaacaccgccgaccaggaagaacgcaaaatgacagtcgaggatgcc
gacatgtccaagtggacggaagccgagtttgaagagaagtgcacgtacatcgtcaaggac
cacacgtgggacagcccagagaagccggatctgccccgtgcccagacctcactgccgaga
aacctggccttcagatatgcccctgattccaaagaggtgatcggcgttgtaagccgtgaa
tacatccctaaaggaactcgatttggccctctagtgggagaaagttatacagcagagaat
gtgcccaaagacgccaacaggaagtacttctggaggatttataccaaaggagagttccat
cactttgtagacggcctggatgaggagaaaagcaactggatgcggtatgtcaatccagga
cactcgcagcaagagcagaacctggcggcatgccagaatggcatgagcatctacttctac
accgtgaaggccatccctgctgaccaggagctgctggtctggtactgcactgacttcgca
caccgtctccactaccctccttcaggagatctcatgatgcaaaagctcaagcaaagtctg
atagaatcaaagcagcaggtgtcagaagaaaagcctgttgtgaagagagagcatactgtc
tcagaaatactcaaagacacgtggcgggagcctgcaagaccactgccaacacgtccccac
tgccccatcagccctgacagacccatctacccacgtgtcatctacccaatccggccacaa
ccgcacctccgagaggatgtcatgaaaaccagcccaagtatctgtttttccactcggtca
cctgcactgtcttcagccaccccaagcccgtcagcccgcagcagccctgaaaccagtcct
ggaagcagtcctacaccagcagatcctagggatgctttgccactctacaatggtggcctg
ggtctgtatcctggctactccccatccaactctctttcctcattctatcatagctcacat
tatgtcttatccccttactccatgagtggaaccccaccagtggggaacgttttctcccgc
atgtaccctctttacaacagcttaatgacccctcacatgcccttcccacccaacatgctt
ccacctgaggggggacgtcatttcctgctgccaccacacagagactttctgcttccaccg
cccaagagtgccttctcaagagcgacaaccccaaaagacaaaccgttgcatggacaccct
cgtgcccccatcagtggttctcccacagctggatcggcagtatctgctgatcagcagcct
gccaacccgacctcagcacagccgagcatccgacatttagaagacgaagcgatcaatctt
agcaagatgaagcgaggccctgcgggatacaagacactgccatacccacttaaaaaacag
aatggcaagataaagtatgagtgcaatgtatgcagcaagactttcggacagctctcaaac
cttaaggtgcacctgcgtgttcacagtggtgagcgtccttttaagtgtcagacatgcaat
aagggcttcactcagctggcccacctgcagaagcactacctggtccatacaggagagaag
ccccacgaatgccaggtatgtcacaaacgtttcagcagcacgagtaatctgaagacacat
ctaaggcttcactcaggtgagaagccttatcagtgcaagctctgcccagccaagttcaca
cagtttgtccacctcaagctgcacaaacggctgcacacacgggagcgcccacacaagtgt
ccgcactgccaccgcaactacatccacctctgcagcctgcgccttcaccttaagggttac
tgcctggctgctatgacttccccccactgcagccttgaagaacttaaccgcattaatgag
gagattgagcgattcgacatcagcgacaatgccgaccggttggaggagatcgagggggtt
gatgtcgagaggctcgtggaaaagcagatcttcagtctgatctgccacgaaatggacctc
aagacctcgtaccacaaaggcagcactggaggggatttgcttcatccttcacatccgtct
agcaccttcggcctgtatgagccaagcagtgaaacatcggttatcaagctcctacctgtc
aaggtcaaacaagagacggtggagtcgatggaattgtag
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