Silurus meridionalis (southern catfish): 124403732
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Entry
124403732 CDS
T08004
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04621
NOD-like receptor signaling pathway
smeo05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
124403732 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124403732 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
smeo04054
]
124403732 (nod1)
Pattern recognition receptors [BR:
smeo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124403732 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
PIF1
NPHP3_N
NTPase_1
AAA_18
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
124403732
NCBI-ProteinID:
XP_046733408
LinkDB
All DBs
Position
21:complement(18975780..18983633)
Genome browser
AA seq
946 aa
AA seq
DB search
MMGCVGQDGAKAPLDACRLLTLYRELLVEKVKNTQCILDNLKMNGFICNEDIEIIQRSIT
KTEQVRKILELVQSKGKEASAYFIHILHQAYDAFIDLRPWFNEIHYAPAECVMDIPVINT
DPISRYSEKLRQELSRDTQFITSYSQKEETRLDELYTDTQMEILNERGESLGFLQSLDEI
LGEEGVFNQLAETIFISGDAGVGKSILLQKLQNLWSKRKLNTNAKFFFTFRCRMFSTFKE
TDEISVKDLIFKHNCYPDGDPDGEVLSYILRFPESVLFTFDGYDEIQLDFDSENMPEVVS
PEERTHPLLVLMNLLSGKLLKGSRKILTARTGTEIQSKVIRKKVFLRGFSPKHLRKYLSY
HFPQQEQRDRVSVQLDANPHLCGLCSFPLFSWIIFKSFKHLQSVYDDVELPGSCVTLTNI
FLLLSEVFLSRSSKSAGLLKRSTRCTAETFRSGLKMLSAFAKLALLGLEKSSFIYTHEEV
SSCGLSDDDVQFGFLRPVGHYDACGASAKYEFLHVTLQSFLAAVCLVLDLNIVSDEILRF
FSKCEFHKTSHLICLSCLGMSSHPINSDPFQTNEHFQFANLFLCGLLSKSNTFLLEHLVP
PASLKKKRKALKSYLSSSIKTHLSGLPRCPSTDIEGNKVHVMPNFLWMLRCIFEIHSKDV
ARLTAKGISADYLKLAYCNIYSADCSALNFVLHHHRKRLAVDLDNNNISDYGVKQLIPLF
SKMTVVRFCVNQLTDSSVEVLATELLKHKIVKVLGLYKNHITDIGAKLVAQIIEECPHIR
TVKLGYNQITAEGATFLAEAIQKSKSIFDVGMWGNSIGDAGAHAFAEAIKNHSSLTNLSL
SANGISSEGGKSLAKALTQNNSLHIFWLIQNKISDDAAGELAKAFEMNSALTHLMLIDNQ
FSACGVEQLSEGLKHNITIKEVNLKGNQVSVEDESRFSDEKRLRFC
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgatgggctgtgtgggccaggatggagctaaagctcctctcgatgcctgtagattactc
acactttacagagaacttttagtggaaaaggtgaaaaatacacaatgcattttagacaat
ctgaagatgaatggcttcatctgcaatgaagacattgagatcatccagcgctccattact
aaaacagagcaggtgcgtaaaatcctggagttggtgcagagtaaaggtaaagaggcgtct
gcatattttattcacattctacaccaggcgtatgatgccttcattgaccttcggccttgg
tttaacgaaattcactacgctccagccgagtgtgtgatggacatacctgtgattaacaca
gaccccattagcagatacagtgagaaactcaggcaggaacttagcagagacactcagttc
atcacctcatactctcagaaagaggagacacgactggatgagctttatacagacacacag
atggaaatcctgaatgagcgaggggagagcctgggatttctgcagagtctggacgagatt
ctgggagaagaaggtgtgttcaaccagctggctgagaccatcttcatctcaggtgatgct
ggagtgggaaaatccattctgctccagaaactccagaacctgtggtccaaaagaaagtta
aacactaatgcaaagttcttcttcacattcagatgcagaatgttcagcacctttaaggag
actgatgagatttcagtgaaggatctgatattcaaacacaattgttatccagatggagac
ccagatggtgaggtgttaagctacatcctgcgatttccagagtctgtacttttcacattt
gatggatatgatgaaatccagttggattttgattcagaaaacatgccagaagtggtttct
cctgaggaacgaacgcacccacttttggttctcatgaacctgctgagtggaaaattgctc
aaaggttccagaaaaattctaacagctcggaccggcacagaaatccagagcaaagtgatt
cggaagaaggtgtttttgagaggtttctcaccaaaacatctcagaaaatatctgtcttat
cactttccccagcaggagcagagggacagggtgtctgtgcagctggacgcgaaccctcac
ctatgtggactctgctctttccctttgttcagctggatcattttcaagagctttaagcac
cttcagagtgtgtatgatgatgtggagctgccaggctcatgcgtcactctcacaaacatc
tttcttctgctgtcggaggtgtttctgagccggagcagtaagagtgctggactcctgaag
agaagcacacgatgcactgcagaaaccttcagatcgggcctaaagatgctctccgccttt
gctaaacttgccctgctgggtttggaaaagagcagctttatttacacccatgaagaggtt
tcctcctgcggcctgagtgatgatgatgttcagttcgggttcctgaggcccgtcggtcac
tacgatgcgtgtggtgcttcggcaaagtacgagtttctccatgtgacactgcagtcattt
ctggctgcggtttgccttgtcttggatttgaacatcgtctcagatgagatcctgaggttc
ttctctaagtgtgagtttcataagacatcccatttgatctgcttgtcctgtttagggatg
tcgtctcatccaataaattcagatccttttcagacaaatgaacactttcagtttgcaaac
ctgttcctatgtggtctgctttccaaatccaacaccttcctcctggagcacctcgttcct
ccagcatccctgaagaaaaagcgaaaggctttgaaatcctacctttcctccagcataaag
acacacctcagcggcctgcctcgctgcccaagcactgatattgagggaaataaagttcat
gtgatgccaaacttcctgtggatgctgcgctgtatatttgagatacacagcaaggacgtg
gctcgtctaacagctaaagggatctcagcagattacctcaaacttgcatactgtaacatc
tactcagctgactgcagcgctctcaactttgtccttcatcaccacaggaagcgtttagca
gttgatctggacaacaacaacatcagtgactatggtgtgaagcagcttattcctctgttc
agcaaaatgactgtggtcaggttttgtgtgaatcagctcacagacagcagtgtggaagtt
ttggctacagaactccttaaacacaaaatcgtaaaagttttggggctgtataagaatcac
attacagacatcggagccaaactggtggcacagataattgaagagtgtcctcacatcaga
accgtgaaactcggctataatcagatcacagccgagggggcgacatttcttgctgaagct
attcagaaaagtaaatcgatcttcgatgttggcatgtggggaaatagcatcggagacgcc
ggggctcacgctttcgctgaggcaataaagaaccacagcagtttaacgaacctcagtctg
tcggcaaacgggatcagctctgagggaggaaaaagtttagcaaaagcgctaacacaaaat
aacagccttcacatcttctggctgattcaaaacaaaatctcagacgatgcagctggggag
ctcgccaaagcctttgagatgaactcagcactcacacacctgatgttaattgacaatcag
ttttctgcttgtggagtggaacagctcagtgaaggtctaaaacacaacataacaataaaa
gaagtcaatttaaaggggaatcaggtcagtgtggaggacgagtctcgcttcagcgatgag
aaaagacttagattctgctga
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