Silurus meridionalis (southern catfish): 124403842
Help
Entry
124403842 CDS
T08004
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124403842 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124403842 (arfgef1)
Membrane trafficking [BR:
smeo04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
124403842 (arfgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Type_ISP_C
Motif
Other DBs
NCBI-GeneID:
124403842
NCBI-ProteinID:
XP_046733592
LinkDB
All DBs
Position
21:4061415..4103323
Genome browser
AA seq
1856 aa
AA seq
DB search
MYEGKKTKNMFLTRALEKILADKEVKKAHHSQLRKACEVALEEIKAESEKLSPPAGESKS
SSSTLPPIKSKTTFIEADKYFLPFELACQSKCPRIVSTSLDCLQKLIAYGHLTGSAPDNT
APGKKLIDRIIETICGCFQGPQTDEGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCYN
IYLASKNLINQTTAKATLTQMLNVIFARMENQALTNHKISWSMASRKRDRQLQEAKQMER
ERHRQHSPLSQQEPESPQQLPDTPAKSQSLSCQEVNGGSAVVGGTPERDSPHYESPETEN
GSDFGPVENEQTEADQATAAEQSAAERASHAPGEEEGLNYEEKAQEIVQSILKEVVSTVI
GDAKESGEGDVEPETTPTSLEEECGLSSDSENVHANGIPGTPISASFTPSLPDDRLSVSS
SDTQESGAPAGPAPGAKFSHILQKDAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKVLSL
QLLLSILQNAGPIFKTNEMFINAIKQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNFKT
HLKMQIEVFFKEIFLYILETSTSSYDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAAN
IFERLVNDLSKIAQGRGGHELGTTPLQELTLRKKGLECLVSILKCMVEWSKDQYVNPNSQ
TSLGQEKPSEHEANESKHSETINRYGSINSLDSTASSGIGSYSTQMSGTDNPEQFEVLKQ
QKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSVQAGEFLGDNDR
FNKEVMYAYVDQMDFQGKDFVSALRLFLEGFRLPGEAQKIDRLMEKFAARYLECNQRQTL
FASADTAYVLAYSIIMLTTDLHSPQVKNKMTKEQYITMNRGINDSKDLPEDYLSSIYNEI
AGKKISMKETKELPLKSNKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSHVQAPFTSA
THLEHVRPMFKLAWTPFLAAFSVGLQDCDDTEVASLCLEGIRCAIRIACIFSIQLERDAY
VQALARFTLLTASSGITEMKQKNIDTIKTLIMVAHSDGNYLGNSWHEILKCISQLELAQL
IGTGVKTRYISGTVRGKDGFITSTKEQSQDEYMGLVGGNVDRKQIASIQESIGETSSQSV
VVAVDRIFTGSIRLDGNAIVDFVRWLCAVSMDELASPTHPRMFSLQKIVEISYYNMGRIR
LQWSRIWEVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFE
HIMKKNRSPTIRDMVVRCIAQMVNSQAANIRSGWKNIFSVFHLAASDQDESIVELAFQTT
GHIVTNVFEKHFPATIDSFQDAVKCLSEFACNASFPDTSMEAIRLIRHCAKYVSDRPQAF
KDYTSDDMNVAPEDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEVMKTYGHTYEK
HWWQDLFRIVFRIFDNMKLPEQQTEKAEWMTTTCNHALYAICDVFTQYFESLSDVLLDNI
LSQLYWCVQQDNEQLARSGTNCLENVVILNGEKFTPEIWDKTCNCMLDIFKTTIPHALLT
WKPAGGDADHVLDLDKQLDSVSQKSVDIQTRTDDQHSVSSIEKALAENRRQSQFGLSIEV
QEQRLFAALLIKCVVQLELIQTIDNIVFFPATSKKEDAENFAAAQRDSLDADVHVETQDQ
GIYRYLTSEQLFKLLDCLLESHRFAKAFNSNNEQRTALWKAGFKGKSKPNLLKQETSSLA
CGLRILFRMYTDPSRQDAWEEVQRRLLNVCSDAVAYFLTLTSESHREAWTNLLLLFLTKV
LKISDERFKAHATCYYPLLCEIMQFDLIPELRAVLRKFFLRIGLVFHIARTLEPEA
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaaggcaaaaagacgaagaacatgtttctaacccgagctctggagaagatcttg
gccgataaggaggtgaagaaggcgcatcactcccagctgcgcaaagcctgtgaggtcgct
ttggaggaaataaaagcggaatcagagaaattaagcccccctgccggagagagcaagtcg
agttccagtaccctgcctcccatcaaatccaagaccaccttcattgaagcggataagtac
ttcctgccgttcgagttagcctgtcagtccaaatgtcctcgcatcgtcagcacgtcgcta
gactgtttacagaaactcatagcttatggtcacctgacgggcagcgccccggacaacact
gctccggggaagaagctcatcgacaggatcatcgaaaccatctgcggctgctttcagggc
ccgcagaccgacgagggagttcagcttcagatcataaaggccctgctgactgctgtgacc
tcgcagcacatcgagatccacgaaggcacggtgctgcaggccgtccggacgtgctacaac
atctacctggcgagcaagaacctcatcaaccagacgaccgctaaagccaccctcacccag
atgctcaacgtcatcttcgcccgcatggagaaccaggcccttacaaatcacaagatcagt
tggtctatggcgtccagaaagcgagaccgtcagctccaggaggccaagcagatggagaga
gagaggcacaggcagcattctccactcagccaacaggagcctgaatctccacagcagctc
ccagatacccccgccaagagccagagcctgtcatgtcaggaggtcaacggagggtcagcg
gtggtgggcggtaccccagagcgcgattcgccgcactacgagagcccggagaccgagaac
ggctccgacttcggccctgtagagaacgaacagacggaggcagaccaggcaactgcagca
gaacagagtgcagccgagcgtgcctctcatgcccctggagaggaggaaggcctgaattat
gaggagaaggctcaggaaattgtgcagagcatactgaaggaagtggtcagcacggtgatt
ggagacgctaaggagagtggagaaggggacgtggagccagagaccacgcctacatcgctc
gaggaggagtgcggcctgagcagcgacagcgagaacgttcatgctaacggcatccccggg
acgcccatctccgccagcttcactccgtctctgcctgacgacagactgtccgtctcctcg
agcgacactcaggaatccggtgctccagcgggtcctgccccaggcgcgaagttctcgcat
attctgcaaaaagacgccttcttggtgttccgctccctctgcaagttatccatgaagccc
ctttcggacggcccgcctgatccaaagtcccacgagctgcgctccaaagtgctctcgctc
cagctgctgctctccatcctgcagaatgcaggccccatcttcaagaccaacgagatgttc
atcaacgccatcaagcagtacctgtgcgtggcgctgtccaaaaacggcgtctcctccgtc
cccgaggttttcgagctgtccctgtccatcttcctgacgctcctgtccaacttcaaaacc
catctcaagatgcagatcgaggtgtttttcaaagagattttcctctacatcctcgagacg
tccacaagctcgtacgaccacaaatggatggtcattcagactctgaccagaatatgtgca
gatgcccagagtgtggtggacatctatgtgaattatgactgcgacctgaacgctgctaac
atattcgagaggctggtgaacgacctgtcgaagatcgcacagggccgaggaggccatgag
ctgggcacgaccccactgcaggagctgactttgagaaagaaaggtctggaatgtctcgtc
tcgatcctcaagtgcatggtggagtggagtaaggatcagtacgtgaaccctaactcccag
accagtctcggccaggagaaaccttctgagcacgaggccaacgagtccaagcactcagag
accattaaccggtatggcagcattaactctttggactccacggcttcctcgggtatcggc
agctacagcacgcagatgtcaggcaccgataacccagagcagtttgaagtgcttaaacag
cagaaggaaatcatcgagcaaggcattgacctgttcaacaaaaaaccaaagaggggcatc
cagtatctgcaggagcaaggcatgctgggaacaaccccggaggacatcgctcagttctta
caccaggaggagaggctagattctgtccaggcaggagagtttctgggagacaatgatcgc
ttcaacaaagaagtgatgtacgcctacgtggaccaaatggactttcaagggaaggacttt
gtgtccgccctgcgtctgtttttggagggtttccggctccctggagaagcgcagaaaatc
gatcgtctgatggagaaatttgctgctagatatttagagtgcaaccagcgacaaaccctg
tttgcgagtgcagacacggcgtacgtcctcgcgtattcaattatcatgttgactacagac
cttcatagtccgcaggtgaagaataaaatgacaaaagagcaatacataacgatgaatcga
ggcatcaacgacagcaaagatttgccggaggactatttgtcttccatctacaatgaaatc
gcgggaaagaagatatctatgaaggagacgaaggaattgcccctcaaatctaataaacaa
agcgtggccagcgagaaacagcgacggctgctgtacaacgtggagatggagcagatggcg
aagacggctaaggctctgatggaagcagtgagccacgtccaggctccgttcaccagcgcc
acccacctggagcacgtcaggccaatgtttaagttggcctggacacctttcctggcggcc
ttcagcgtcggattgcaggactgcgatgacaccgaggttgcctctctgtgcctggagggg
atccgctgcgccataagaatagcctgcatcttctccatacagttggagagagatgcgtat
gtgcaggctctggctcgcttcaccttgctcacagccagctctgggatcacggagatgaag
cagaagaacattgatactatcaagacccttatcatggtggctcacagtgatgggaattac
ctgggaaactcgtggcatgagattctaaagtgcattagtcagttggaactggcccagctc
attggcacaggggtgaagactcgctacatatccgggactgttcgaggcaaagatggtttc
atcactagcaccaaagagcagagtcaagatgagtatatgggcctcgttggtgggaacgta
gatcggaagcagattgctagcattcaagaatctattggagagaccagctcgcaaagtgtt
gtggttgctgtggacaggatattcacaggatccattaggttggatggaaatgctatagtt
gatttcgtgcgatggctgtgcgccgtgtccatggacgagctggcctctccgacccacccg
cgcatgtttagcttgcagaagatcgtggagatttcctactacaacatgggccgcattagg
cttcagtggtccaggatctgggaagtgatcggagatcatttcaacaaggtgggctgtaat
cccaacgaggatgtcgccatctttgctgtggattcgctcagacagttgtctatgaagttc
ttggagaagggagaactggccaattttagatttcagaaggatttcctgaggccgtttgaa
cacatcatgaagaagaacagatcgcccaccatccgagacatggtggtacgctgcatagct
cagatggtgaactcgcaggcggcgaacatccgctcaggctggaagaacattttctccgtg
ttccatttggcagcttcagatcaggacgagagcattgtggagctcgcctttcagaccact
gggcacatcgtcacgaatgtattcgagaagcactttcccgccaccatcgactccttccag
gacgctgtgaagtgcctgtccgagttcgcctgtaacgcttcgttccccgacaccagcatg
gaggccatccgtctgatacgccactgcgccaaatacgtctccgaccggcctcaggcgttt
aaagactacactagtgacgatatgaatgtagccccagaggaccgggtgtgggtccgaggc
tggttccccatcctgttcgagctctcctgcatcatcaacaggtgcaagctggacgtcagg
accaggggtctgacggtgatgttcgaggtgatgaagacttacggtcacacgtacgagaaa
cactggtggcaagacctgttccggatcgtcttcagaattttcgataacatgaagctaccc
gagcaacagactgagaaagcagagtggatgaccacaacctgcaaccacgcactttatgcc
atctgtgacgtcttcacgcagtacttcgagtctctcagcgatgttctgctggacaacatc
ctctctcagctctactggtgtgtgcagcaagataacgagcagctggcgaggtccgggacc
aactgcttggagaatgtagtgatcctgaacggagagaagtttacgcccgagatctgggac
aagacgtgcaactgcatgctagacatcttcaagaccaccatcccacacgcgttgctgacg
tggaagccggccggaggggacgccgatcacgtgctcgacttggacaaacaactagactcc
gtctcccagaagtctgtggatattcagacccggacagacgaccagcactctgtgagcagc
attgagaaggcgctggctgaaaaccggagacagagccagttcggtttgtctatagaagtc
caggagcagaggctgttcgcagcactgctcatcaagtgtgtggtgcagctggagctcatc
cagaccatcgataacatcgtcttctttccggccaccagcaagaaggaggacgcggagaac
ttcgcagcagcgcagagagactctctggacgccgacgtccacgtggagactcaggatcag
ggaatttaccgctacctgacctccgagcagctgtttaaactgctggactgcctgctggag
tcacaccgcttcgctaaagccttcaactccaacaacgagcagaggacagcgctgtggaag
gccggttttaaagggaagtccaaacccaacctgctgaaacaggagacgagcagtctggcc
tgcgggctgcgcatcctcttccgcatgtacactgatcccagcagacaggacgcctgggag
gaggtgcagagacgcctgctcaacgtgtgcagcgacgccgtggcgtatttcctcacgctt
acgtcagaaagtcaccgcgaggcctggaccaacctcctgctcctcttcctcaccaaagtg
ctgaaaatcagcgatgagcgcttcaaggcccacgccacctgttactaccccctgctgtgc
gagatcatgcagttcgacctgatccccgagctcagagccgtgctgaggaagttcttcctg
cgcatcgggctcgtgttccacatcgctcgcacactcgaacccgaggcctag
DBGET
integrated database retrieval system