Silurus meridionalis (southern catfish): 124403893
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Entry
124403893 CDS
T08004
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1-like
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124403893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
smeo04121
]
124403893
Enzymes [BR:
smeo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124403893
Ubiquitin system [BR:
smeo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124403893
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_3
zf-C3HC4
RING_XB3-XBAT31
zf-C3HC4_2
Baculo_IE-1
Motif
Other DBs
NCBI-GeneID:
124403893
NCBI-ProteinID:
XP_046733699
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All DBs
Position
21:17948787..17952467
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AA seq
400 aa
AA seq
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MSETSMNPTRRAEEILDEIYSDLLECKVCFETFSSQPRARRPRNLPCGHVICLGCVCALS
HTVSHRLECPFCRKQCGQGDTYECQVLVDLQETIRPFFPRKKTQESEGNLGSGVMQLHGA
FGGWGPLINPTGVVVFRASQDVLVAHGGHERVTVFGCRGQYLRSFGRYGHDSFEICHPLD
IAVAPGGHVVLADAGNRSVKVFSSTGRPLATVSDLFQLPWGVDVDLLGNILVTDAEAGTL
TQIVLDFGSGVVLAKKVTVKDLKTPRAVACCKASRRVVVVEHLQVREDAEQTRLKVFGRD
FELLRQIDNLRMNISAVTFNRNGGLLVADTQRGLVWSLGDVCEAPEMIPLVQEGLVRPVG
LATTDDDTLIVLDAGDHTVKMYMSRTEDLYSDRHSENFEL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagacctccatgaaccccaccagaagagctgaggagatccttgatgagatctat
tccgatctgcttgagtgtaaagtgtgtttcgagacgttttcatctcaacccagagctcga
agaccacgcaaccttccctgcggtcacgtgatctgtctggggtgcgtctgcgccctgtct
cacaccgtgtcccatcgtctcgagtgtcctttctgcaggaagcaatgcggtcaaggtgac
acctacgaatgccaggtccttgtcgacctccaggaaaccattcgtccgttcttcccgcga
aaaaaaacccaagaatctgagggaaatcttgggtcaggggtcatgcagttgcatggtgcc
ttcgggggatggggtccgctcattaacccgacgggtgtggttgtgttcagggcgtcgcag
gacgttctggtggcccacggcgggcacgagcgagtgaccgtgttcgggtgtcgtggtcag
tacctgcgcagttttgggcgctacggtcacgacagctttgaaatctgccatcctttagac
atcgccgttgctcccggcggccatgtcgtcttggcggatgctggaaatcgctcagtcaag
gtgttctcgtcaacaggacgtcccctggccacggtctcagacctgtttcagctcccttgg
ggtgttgacgtggacctcttggggaacatcctggtgacggatgccgaagccggaacgctt
acgcagatcgttctagacttcggaagcggcgtggttctggcgaagaaggtcacggtgaaa
gatctgaagaccccccgagctgttgcttgctgtaaagcatctagacgcgtcgtcgtggtg
gaacatctccaggtgcgagaagacgcagagcagacgcgcctgaaggtgtttggaagagat
tttgagctcctcaggcagattgacaatttgaggatgaacatctcggccgtgaccttcaac
agaaacggtgggctgctggtagccgatacgcagcgtggactcgtgtggagtttgggggac
gtttgtgaagctccagagatgattccactggttcaagagggactggtgcgtccggtggga
ttagcgacaactgacgacgacacgctgatcgtcctggatgctggagatcacaccgttaag
atgtacatgagccgcaccgaggacttatacagcgatcgacattcagagaacttcgaatta
tga
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