KEGG   Shewanella mesophila: K0I73_01575
Entry
K0I73_01575       CDS       T09171                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
smes  Shewanella mesophila
Pathway
smes03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:smes00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K0I73_01575 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:smes03021]
    K0I73_01575 (rho)
   03019 Messenger RNA biogenesis [BR:smes03019]
    K0I73_01575 (rho)
Transcription machinery [BR:smes03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     K0I73_01575 (rho)
Messenger RNA biogenesis [BR:smes03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     K0I73_01575 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 Spore_III_AA FtsK_SpoIIIE AAA S1CSD-TOTE-2 DUF961
Other DBs
NCBI-ProteinID: QYJ86476
LinkDB
Position
complement(343315..344580)
AA seq 421 aa
MNLSELKDTPISDLVQLAQDMKLENMARARKQDIIFAILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVTEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNMAQSIAYNNPEVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSGMEFLIDKLAMTKTNDEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttatcagaattaaaagacacaccgatttcagatttagtacaacttgcccaagac
atgaagctagaaaatatggcccgcgctcgcaagcaggacatcattttcgcaatccttaaa
gcccacgcaaaaagcggcgaagatattttcggtggtggtgttttagagattctgcaagat
ggctttggcttccttcgtagctctgatggttcatacctagcaggtcctgacgatatctat
gtgtcgccaagccaaatacgccgctttaacatgcgtacaggtgacaccatcttcggtaag
attcgtccaccaaaagagggcgaacgttatttcgccctattaaaagtgaccgaagttaac
ttcgataagccagaaaactctcgtaataaaatcctatttgaaaaccttacccctctgcat
gccgaagaacgtatgcgtatggagcgtggtaatggttcaactgaagatattacttctcga
atcctagatctgtgttcacccattggtaaaggccaacgtggcttgatcgtagcgccgccc
aaagcaggtaaaacactactacttcagaatatggcgcaaagcatcgcctacaacaatcct
gaagtggtattgatggtgctgctaatcgatgagcgtccagaagaagtaaccgaaatgcaa
cgtatggtgaaaggcgaagttattgcttctaccttcgatgaaccagcgagccgtcacgta
caagttgcagaaatggttatcgaaaaagctaaacgattagttgagcacaagaaagacgtg
gttatcttgcttgactctatcacccgtcttgcacgtgcttacaacacagttatcccatca
tcaggtaaggttcttactggtggtgtcgatgctaacgcactacatcgtccaaagcgtttc
ttcggtgcggcacgtaacatcgaacacggcggcagcttgaccattatcgcaacagcattg
gttgatacaggttcgaaaatggatgaagtgatttacgaagagtttaaaggtacaggtaac
caagagttacacctttctcgtaaagccgctgagaaacgtgttttcccagcgatcgacttt
aatcgctctggtactcgtcgtgaagagaagctcaccacacctgatgagctacaaaagatg
tggatcctacgtaaaatccttaatccaatggatgaggtgagcggtatggaattccttatc
gataagctggctatgaccaagaccaacgatgagttctttacagcgatgaaacgcgctaag
agctaa

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