Shewanella mesophila: K0I73_01585
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Entry
K0I73_01585 CDS
T09171
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_01585 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_01585 (rhlB)
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I73_01585 (rhlB)
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I73_01585 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYJ86478
LinkDB
All DBs
Position
345310..346617
Genome browser
AA seq
435 aa
AA seq
DB search
MSETHLTNQKFADFSLHPEIQKALIESGFEYCTPIQALSLPILLQHKDIAGQAQTGTGKT
LAFLIATFNHLLTTSVPEGRETNQPRAIVMAPTRELAIQIAKDANLLAKHTGLKVGIVFG
GESYDVQRKVLDKGVDILIGTTGRIIDYVRQGVLNVSSIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKSRLNMLFSATLSMKVQELAYDHMNDPEKVEIAPSEKTSKNITEEIFYPSQ
EEKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWAHLEGDGHRVGLLTGDVPQKKRIRILE
QFTSGDLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGQKGISISFA
CEEYALNLPAIESYIQHSIPVTNYDSDALLDDLPPPVRIHRKHTTRPTGRPGSGKPQGGR
PGARPRRHDRTRRHS
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttaacaaatcaaaagtttgccgacttttctctgcatccagagatc
caaaaggcactaatcgaaagcggctttgaatattgcacgcctatccaagcattatcatta
ccgattttacttcagcataaagatattgcgggtcaagcacagacgggtacgggtaaaacc
ttagcctttctaattgccacctttaaccacttactgacaacttctgttcccgaaggtcgt
gaaactaatcagcctcgtgcgattgtgatggcgcctactcgtgagttggcaattcaaatt
gctaaagatgcgaatttacttgctaaacatacaggcctaaaagtcggtattgtctttggt
ggtgaaagctacgatgtgcagcgtaaggtgctggataagggcgtagatattttgatcggt
acaaccgggcgtattatcgattatgttcgtcaaggtgtactgaacgtcagttcgattcag
gccgtagtgctcgatgaagccgatcgtatgtttgatctaggctttatcaaggatattcgc
ttcctatttaggcgtatgcctgatgctaagtcacgtcttaacatgttgttttcagcgacg
ctgtcaatgaaagtgcaagagttggcttatgatcatatgaatgatcccgaaaaagtcgaa
attgcaccgagcgaaaaaacctcgaaaaatattaccgaagagatcttctatccttcacag
gaagagaagatgcgcttgttgctaaccttgattgaagaggattggcctgaaaaagctatc
gtattctctaacactaagcacagctgcgaaaatctttgggcacatttagagggtgatggt
catcgcgttggtttgctgactggtgatgtgccgcagaagaagcgtattcgcattcttgag
cagtttacctctggcgacttagatattttagtggcaaccgatgttgcggcgcgtggatta
catatctctgatgtgtcgcacgtttacaactatgatcttccagatgattgcgaagattat
gtgcatcgtatcggccgtacaggtcgtgctggtcaaaaagggatctcaatcagtttcgcc
tgtgaagagtatgcccttaacttaccagcgatcgagagctacattcagcactctatccct
gtgactaactacgatagcgatgccttgcttgatgatcttccaccaccggtacgaattcat
cgtaaacacacgacacgccctacgggtcgtccaggtagtgggaagcctcaaggtggtcgt
cctggagcgcgtccacgacgccatgataggactcgtagacacagctaa
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