Shewanella mesophila: K0I73_01700
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Entry
K0I73_01700 CDS
T09171
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
smes
Shewanella mesophila
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_01700 (csrD)
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I73_01700 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
Cadherin_C_2
Aa_trans
Motif
Other DBs
NCBI-ProteinID:
QYJ86498
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All DBs
Position
368836..370746
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AA seq
636 aa
AA seq
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MKITEILTKKLTAFWLLSLAAVAFIFLLTALVSFVQLTYKFQQRQMSEFESMLLQHQQQH
QLKHFDIWLPPILSAYNAQHFLLTRNGEVVYQYDNPNSETSLVHYDRVLSEPLALTFHIS
LPQPFVLNNVSWHGALIFLFGVVVIWLFVRWGHAWLAEQLEGVEDLAKRSHLILSGDYDK
ALAESGHGRPRLINRALTQLLLELEDAQKQRARFDQFIRSNTFLDPETGIGNRLFLKNRL
DALSNNEGMMAPGVLLLLEMEDLDLLQQELGEEAIHELLSQTISGISQLLDTQANSIFSR
RSYNQFAIVVPQISLADVEKLAAKLLKVCLAQPLDGVNNRDDFFHIGLAYFKVGESKEQL
LEEAEMALRAAQFQGSSSWFMYDKGAVDEEFARGTVRWRSFLEYALVNKRVVAFSQPVMD
SDGLEHHKEISCRLRDSSGGLVRATLFLPMAIKCGLTPQIERQVIETVLFDLLGSNPTDD
AKYSVNLSLDTLSSRAFIRWLKTTLLEYRHLTSQLIFELNEDILVNNMDKLKPHLDMISK
MGASLCVDRVGQQVVSMEYIQACKIDIIKLHRSIVRQIHLRQENQLFVRSIIGGLYRSEV
QFFAEGIESFEEWQTLKILGVSAGQGSLFSEPMEEV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcactgaaatactgaccaaaaaattaaccgctttctggctactatccttagct
gctgtagcgtttatctttttacttaccgctttggtcagttttgttcagctaacctacaag
tttcaacaacgccagatgtcggaatttgagtcgatgctgttgcagcatcaacaacagcat
cagttaaaacacttcgatatctggttaccaccaatcttatcggcttacaacgcccagcat
tttttgttaactcgcaatggcgaagtcgtctatcagtacgacaatccaaatagcgaaacg
agtttagttcattacgatcgtgtcttgagtgaacctctggcactcaccttccatatcagt
ttgccacagccctttgtgcttaataatgtgagttggcacggcgcgctgatttttctattt
ggtgtggtcgttatctggctatttgtgcgctggggtcatgcctggttagcagagcagctt
gaaggggtcgaagatcttgctaagcgaagtcatcttattttgtctggcgattatgataaa
gcgttagcagagagcggtcacggtcgaccgcgcttgattaatcgcgcattgacacaatta
ctgctcgaacttgaggatgcccagaagcaacgagcccgcttcgatcagtttattcgttct
aatacttttcttgatcctgagactgggattggtaaccgtttatttttaaagaatagactc
gatgccttaagtaataacgagggtatgatggcacccggtgtgttgctgctgttggagatg
gaagatcttgatctgctgcagcaagagctcggtgaagaggctatccatgaactgcttagc
caaacgatcagtggtatcagccagttgctcgatactcaagccaacagcatattctctcgt
cgctcctataatcagttcgcgattgtggtgccgcaaatatccttggcggatgttgaaaag
cttgccgccaagttattaaaggtctgtttagctcaacctctcgatggggttaataatcga
gatgatttttttcatatcggccttgcttacttcaaggtgggtgaaagtaaagagcagctg
cttgaggaagcagagatggcgctgagagccgcacagttccaaggcagcagtagttggttt
atgtacgataaaggtgctgtcgatgaggagtttgcgcggggaaccgtgcgttggcgtagc
tttcttgaatatgccttggtgaataagagagtcgttgccttttctcagccagtaatggat
agcgatggccttgagcatcacaaagagatctcctgccgacttagggatagcagcggtggt
ttagtgcgggcgaccctgtttcttcctatggcaataaagtgtggtttgacaccgcagata
gagcgtcaagtcatcgaaactgtgttgtttgatctattagggagtaatcctactgatgac
gcaaaatacagtgtcaacttgagtttagatactttaagtagccgcgcgtttattcgttgg
ttaaaaacgactttactcgaatatcgtcaccttacttcgcaattaatttttgagctgaat
gaagatatcttggtgaataacatggataaactgaagcctcatctggatatgatcagtaag
atgggggcaagtctgtgtgtcgatcgtgtgggtcaacaagtggtgagtatggaatatatt
caagcctgcaaaatcgatatcattaagctgcatcgttcaatcgtgagacagattcatcta
cgtcaggaaaatcaactgtttgtaagaagtattatcggtggattatatcgctccgaggta
cagttttttgccgaagggattgagtcatttgaagagtggcaaacattgaaaattttaggg
gtgagcgcaggccaaggcagtctgtttagcgagccgatggaagaagtttaa
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