Shewanella mesophila: K0I73_02755
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Entry
K0I73_02755 CDS
T09171
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
smes
Shewanella mesophila
Pathway
smes02020
Two-component system
smes02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0I73_02755
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0I73_02755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smes03021
]
K0I73_02755
Transcription machinery [BR:
smes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0I73_02755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYJ86690
LinkDB
All DBs
Position
complement(615272..616765)
Genome browser
AA seq
497 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQEGADNGA
REERNDNNETYEVDYENKLQVDSSEDNSGLETSDALTQDSMPDELPVDTTWDEVYTASPN
SSSGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCD
DILEAMGDPEIELDEIEAVLKRVQHFDPVGVAARDLSECLTIQLAQYGNDTPHIANARML
ISEHLDLIAGRDFRLLMRKTKLKEDDLRDAISLIQTLNPRPGLAITASRDEYVIPDVTVT
KKKGRWVVELNPDSMPKINVNQHYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNET
LLKVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFEL
KYFFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIA
KYREAMLIPPSNQRKSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcacttcagctcaaaatgggtcagcatttaaccatgacaccccaattacag
caagcaattcgtttgttgcaattgtcgtcattggagctgcaacaagagatccagcaggca
ttagaatctaacccgcttttagagttagatgaggagcaagagggcgccgacaacggcgct
cgagaagagcgcaatgataacaatgaaacctacgaggtcgactatgaaaacaagctacaa
gtcgactcgagtgaagataattctggcttagaaacatccgacgcgctcacccaagattcc
atgcccgatgaactcccagttgatactacatgggatgaggtatacacagcgtcacctaac
tccagttcgggggcaatgcgcgacgatgatatgccttttcaaggggaaactagtgaaggc
ttgtatgaacacctcgagtggcaaaaaaatcttactcccttttctgataacgacttagcc
atcgctaccgcaattatcgatgccatcgacgaacgcggttacctcactcaaacctgcgac
gatattcttgaggccatgggcgatccagaaattgaactggatgaaatagaagcggtacta
aagcgcgtccaacatttcgatcctgttggcgttgcagcgcgagatctcagcgaatgttta
actattcagctagcacaatacggtaatgatacccctcatattgccaatgcaagaatgttg
attagcgaacatctagatcttatcgctggtagagattttcgcctattgatgcgaaaaact
aagttaaaagaagacgatttacgcgatgctatctcactgatacagactctcaatccacgt
ccaggtttggctattactgccagccgagacgaatatgttatcccggatgtcaccgtgacg
aagaaaaaaggtcgttgggtcgtagagcttaatcccgatagtatgcctaagattaatgta
aaccagcattatgccgcaatggctcgcagcactaagagtcaggccgatggacaatttatt
agaggtcacctacaagaagctaaatggttcttgaaaagtttagagagtcgcaacgaaacc
ctgttaaaagtcactaactgtattgttgattttcaacaaggcttctttgagtttggtgaa
gaagcgatgaagccgatggtgttaaacgatattgctgaagccgttgaaatgcatgagtcg
accatctctcgagtaacaacgcaaaagtatatgcacaccccgagaggcatttttgaacta
aaatacttcttctctagccatgtgggaaccgacgatggcggagagtgctcttctactgca
atacgagcatttatcaaaaagctcgtcgcagcagaaaaccagaagaagccgttaagcgac
agcaaaatggcgcaacttttggcagaacaaggcattaaagtcgcaagacggacaattgct
aaatatcgagaggctatgttgataccgccatcgaaccaacgtaaaagtttgtaa
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