Shewanella mesophila: K0I73_03320
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Entry
K0I73_03320 CDS
T09171
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_03320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_03320
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I73_03320
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I73_03320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF8086
AAA_22
P-loop_SecA
HEM4
AAA_30
CMS1
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QYJ86792
LinkDB
All DBs
Position
complement(727892..729361)
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AA seq
489 aa
AA seq
DB search
MSFTSLGLSAPILKAVAQKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGERARAKQVRALVLTPTRELAAQIAESVTTYGKYLPLRSAVVFGGVGISPQISQL
NRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKVLAILPPKRQ
NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNTTANTVEQLICPVDKTQKSAALVQLIKQ
NDWQQVLVFSRTKHGANRLAKNLDAKGITSAAIHGNKSQGARTKALANFKTGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAISLVSSEEFKLLADIER
LIGKNLPRTEVVGFESTHKLPETDLTPKRHNQNRGPRNTKPSGNRAPRNSGGHNRNDDKP
QANREGQSKRRSGAASKPSAEGQSQDRQGQNRQGQGESKSPYQGKSEHRDGNAPARRRTR
RPNAAALTK
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctaggtttatccgccccaattttaaaagctgtagcccaaaaaggt
tatgaaacaccctcccctatccaagcacaggcaattcctgcggtgttagaaggcaaggat
gtgatggcggcggcacaaaccggcacgggcaagacggcaggctttaccctgccactgcta
gaactactgagcaaaggcgagcgtgctcgcgctaagcaagtgcgcgccttggtattaaca
ccaacacgagagctcgcagcacaaatcgcagaaagcgtcaccacatacggtaaatacctt
ccgcttcgcagcgcggtggtatttggtggtgtaggtattagcccacagatcagccagctt
aatcgcggcgtcgatattctggtggcaacaccaggacgtttactcgacctttataatcaa
agagccttaagctttagccaactcgaagtcttagtactcgacgaagccgaccgcatgcta
gacatgggctttattcacgatatcaaaaaggtattggccatattgccgccaaaacgccaa
aacctaatgttttcggccaccttctccgatgagatccgcaccttagccaaaggcttagtg
aataacccagtcgagatctcggtgaccccacgtaacaccacggctaacactgttgagcag
ttaatttgtcctgtggacaaaactcaaaaatcggcggcactggtgcaactcattaaacaa
aatgattggcaacaagtattggtatttagtcgtaccaagcatggcgccaaccgtttagcc
aagaacttagatgccaaaggtatcacctcggcggcgattcacggcaataagagccaaggt
gcacgaaccaaagccctcgccaactttaaaactggtgaagtgcgtgtgttagtggcgacc
gatattgccgctcgtggtctcgatatcgaccaactgccacaggtggtcaactttgatctg
cccaacgtgccagaggattatgtgcatcgtatcggtcgtactggccgcgcgggtgccgat
ggcaaagctatctccttggtcagcagcgaagagtttaaactgctggccgatattgagcgc
cttattggtaaaaacttgcctcgcaccgaagtggtagggtttgaatcgactcacaagctg
ccagaaacagacttgacgcctaagcgccacaaccaaaaccgtggtccacgtaataccaag
ccaagcggcaaccgcgcaccgcgtaatagtggcggacacaaccgcaatgacgataagcca
caagccaaccgcgaaggccaaagtaagcgtcgcagtggcgcagccagcaagcctagcgcc
gaaggccagagtcaagatcgtcaaggtcagaatcgccaagggcaaggagaaagcaagagt
ccttaccaaggcaagagcgaacacagagatggtaacgcaccagcacgccgtcgtactcgc
cgcccaaatgcggcagcactgacaaagtag
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