Shewanella mesophila: K0I73_05335
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Entry
K0I73_05335 CDS
T09171
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_05335 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_05335 (pnp)
03016 Transfer RNA biogenesis [BR:
smes03016
]
K0I73_05335 (pnp)
Enzymes [BR:
smes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0I73_05335 (pnp)
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0I73_05335 (pnp)
Transfer RNA biogenesis [BR:
smes03016
]
Prokaryotic type
tRNA degradation factors
K0I73_05335 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
KH_KhpA-B
aRib
RNase_II_C_S1
DUF6946
Motif
Other DBs
NCBI-ProteinID:
QYJ87143
LinkDB
All DBs
Position
1185203..1187305
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSELELSVAG
TENAVLMVESEANALPEEVMLGAVVYGHEQQQVVIEAIKELRAEVNKPVWDWAAPVQDQD
LVAKIKDLAEVGLTEAYQIQVKQDRYVQVGVVKTAAKEALLAENPDANTREIDGLLASLE
KKVVRSRIIAGNPRIDGREPDMIRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGTERD
AQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIKAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITQEIMQIALQQAYGARVHILNVMDQAI
SGHREEISDHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIASSN
GEATQEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaaaagttttgaatatggtcaacatacagtcacgctagagactggg
gttattgcacgtcaagctgacgctgctgttttagcaagtatgggtgatactacagtttta
gtaactgttgtcggaaagaaagctgaagagccaggtcgtgacttttttccattaaccgtt
aactaccaagaaaagacatatgctgctggtaaaatccctggtggattttttaagcgtgaa
ggccgtccatctgaaggtgaaacattaacagcacgtcttattgaccgtccaattcgtcca
ttattccctaacggctttaagaacgaagttcaggtcatcattactgtagtttccgttgat
ccagaaattagccctgaagttatctctatgattggtacttcagcagcactgtctatctca
ggtattccatttaatggtccactcggttcggctcgtgtcggctatgtgaacggcgaatac
atcctaaacccaaccgtttctcagctagttgacagcgaacttgaattgtcagttgcgggt
actgaaaacgcagtacttatggttgagtctgaagcgaacgcgcttcctgaagaagtcatg
ttgggtgctgtggtttatggccatgaacaacaacaagtcgttattgaggcaattaaagaa
ctacgcgctgaagttaacaaaccagtatgggattgggctgcaccagttcaagaccaagat
ttggttgctaagatcaaagatttggctgaagtgggtttaaccgaagcttaccaaattcaa
gttaagcaagaccgttacgttcaagtcggtgttgttaaaacagcagctaaagaagcatta
ttagctgaaaacccagacgcaaacacacgcgaaatcgacggccttctagctagcctagag
aagaaagtggttcgtagccgtatcatcgcaggcaaccctcgtatcgatggccgcgaacca
gatatgatccgcgcactaaacgtaatggctggtgtattgccacgtactcacggtagctca
ctgtttactcgtggtgaaactcaggcgttagtgacttgtactttaggtactgagcgtgat
gcacagaagattgatagcatcatgggcgaatacaccaatcgctttatgcttcactataac
ttccctccatactctgttggtgaaacaggtatggttggttcgccaaagcgtcgtgaaatt
ggtcacggtaagctagcttggcgtggtattaaagctgttatgccaacggctgaagagttc
ccatacagcgttcgcgtagtatctgaaatcactgaatctaacggttcaagctctatggct
tcagtttgtggtacttcactagcgcttatggatgccggtgtaccaatcaagacttctgtc
gctggtatcgctatgggtctagttaaagaaggtgacgatttcgtcgtactttctgatatt
ctaggcgatgaagatcacttaggtgacatggactttaaagtagcgggtactcgtgacggt
attactgcactgcagatggatatcaagatcgaaggtatcacgcaagagatcatgcaaatt
gcacttcagcaagcctatggtgctcgtgtacatatcctaaacgtgatggaccaagcgatt
tcaggtcaccgtgaagagatctctgaccacgctcctcgtatcaccaccatcaagatcaac
cctgaaaagatccgtgatgtgattggtaaaggcggtgcgacaattcgtgcgttgactgaa
gagactggcaccacaatcgaacttgatgacgatggtacagtgaaaatcgcttcttcaaat
ggtgaagcgactcaagaagcgattcgtcgtattcaagagatcactgctgaagttgaagtg
ggcactgtgtacaacggtaaagtggttcgtatcgttgacttcggtgcatttgttaccatt
cttcctggtaaagatggtctagtacacatttctcaaatcgctgaagagcgtgttgcaaat
gtttctgattacctagaagttggccaagaagtgaaagttaaggtgatggaagtggatcgc
caaggtcgagttcgtctttcaatgaaagaagctcagcctaaagaagaagctgctagcgaa
taa
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