Shewanella mesophila: K0I73_06255
Help
Entry
K0I73_06255 CDS
T09171
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smes
Shewanella mesophila
Pathway
smes03030
DNA replication
smes03430
Mismatch repair
smes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I73_06255 (dnaE)
03430 Mismatch repair
K0I73_06255 (dnaE)
03440 Homologous recombination
K0I73_06255 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smes03032
]
K0I73_06255 (dnaE)
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_06255 (dnaE)
Enzymes [BR:
smes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0I73_06255 (dnaE)
DNA replication proteins [BR:
smes03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0I73_06255 (dnaE)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0I73_06255 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QYJ87303
LinkDB
All DBs
Position
1404308..1407781
Genome browser
AA seq
1157 aa
AA seq
DB search
MSEPRFVHLRVHSDFSMSDGLAKVKPILAKASELEMAALALTDKTNLCGLVKFYSGCHGA
GIKPIIGTDFSMLVPGFEDEFCSITVLAMNNEGYKNLTLLISDAYLRGHVRDRAVIDQAW
LIKYSEGLILLSGAKDGDVGKALLKGNAGQVDSLIEFYQTHFPDRYYLELIRTGRADEER
YLHMAVELANNKELPVVATNQVVFIQPEQFEAHEIRVAISDGFTLADPRRPKTYSEQQYF
RSQDEMCELFEDIPEAITNTVEIAKRCNVTVRLGEYFLPNFPTGDLSIEDFLVAVSKKGL
EERLEFLFPDEQERIARRGEYDERLDVELTVINNMGFPGYFLIVMEFIQWGKDNGIPIGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGRDAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKMIPAEPGMTLAKAFEAEPA
LPEAYHADEEVKDLIDMCRILEGVTRNAGKHAGGVVIAPTVITDFAPLYCDSEGHNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALQMINPRLEKEGKEPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKTLLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFKEGAINNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPS
QFMAAVMSADMDNTDKIVTLVDECDRMGLPLLPPDVNKGLFRFTVDDDQKIVYGIGAIKG
VGEGPVDSILKARQDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDTLGPHRASMMAT
LPEAIRAADQHAKAEAIGQHDMFGLLNSEPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTERGKTMKAAGLVVATRVMMTKRGSKMGLVTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILIIEGEVSFDDFSGGNRMTARNIIDMGEARSHFAQ
AVEVDVESDSIDNQWLERFEQALLPWKQGSVPVVINYAQPQAKAQFKLGDEWRVNPTDEL
MLALETLTGSDKVRIVF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacctcgtttcgtgcatctgcgcgttcacagtgatttttctatgtctgatggc
ctcgcgaaagtgaagcctattcttgctaaagccagcgaacttgaaatggcggcgcttgcg
ttgaccgacaagaccaacttgtgtggtttggttaagttttatagcggatgtcatggtgcg
gggataaagccgattattggcactgatttttctatgctggtgcctggatttgaggatgag
ttctgttcaatcactgtattggcaatgaataacgagggctataaaaacctgactttattg
atcagtgatgcctatttaaggggtcatgttcgagaccgggcggtgatcgatcaagcgtgg
ttgattaagtatagcgaagggctcattttactctctggtgcaaaagatggtgacgtaggc
aaggcgctgttaaaaggtaacgctggccaggttgactctttgattgagttttatcaaacc
cattttcccgatcgctattatcttgagttaattcgtactggccgcgccgatgaagagcgc
tatcttcatatggcggtagaactggctaacaacaaagagcttccggtcgttgccactaac
caagtggtatttattcaaccggagcagttcgaagcccacgagatccgtgttgcgatttca
gacggctttacccttgccgatccgcgtcgacctaagacctatagcgagcagcaatatttt
cgctcgcaagatgagatgtgtgagctgtttgaggatattcccgaagcgattaccaacacc
gttgagatcgctaaacggtgtaatgttacggtcaggctcggagagtatttcctccctaat
ttcccaacgggcgatctttctatcgaagattttctggttgcagtgtctaagaaagggctc
gaagagcgtctggaatttctctttcccgatgaacaagagcgtattgcgcgccgaggcgaa
tatgacgagcgcttagatgtcgaactgaccgtgattaacaacatgggatttcctggttac
ttccttatcgtaatggagtttattcagtggggtaaagataacggcatccctattggtcca
ggtcgtggctcgggagcgggttccttagtggcctacgcgcttaaaattaccgatctcgat
ccgctggagtttgacctactattcgaacgattcttgaaccctgaacgtgtatccatgccc
gatttcgacgtcgatttctgtatggatcgccgtgatgaggtgatcgaccacgtggccgag
ctctatggtcgtgatgcggtatcacagatcattaccttcggaaccatggccgcgaaagcg
gtagtacgtgacgtggggcgtgtgcttggtcatccctacggttttgttgaccgaatttcg
aaaatgatccccgcagagccagggatgacgctggctaaagcctttgaggccgagcctgcg
ttgcctgaggcctatcacgccgatgaagaagtcaaagatctcatcgatatgtgccgtatc
ttagaaggtgttacccgtaacgcgggtaaacatgcgggtggggtggtgatcgcaccaacg
gttattaccgattttgcgccgctttattgtgactcagaaggccataatccagtcactcag
tttgataaaaacgatgtggaaaccgcgggtctggttaagttcgacttcttaggactgcgc
acattaaccattattgactgggcgttgcagatgattaatccgcgccttgagaaagagggt
aaagagccggttagaatcgaagcaattccgctagacgaccccgcatcatttagactactg
caacgctacgaaactacggcggtattccagctcgaatcccgcggtatgaaggatctcatt
aaacgtcttcagcccgattgcttcgaagatatgatcgcactggttgccctgtttagacct
ggcccgttacagtcgggcatggttgacaacttcatcgagcgtaagcatgggcgtgaagag
gtgtcgtatcctgactctcaataccaacatgagtcgttaaagaccctgcttgagccgacc
tatggcattatcttgtatcaagagcaggtgatgcagatcgctcaggtactctctggctac
acccttggcggtgcggatatgctgcgtcgtgctatgggtaagaaaaagcctgaggagatg
gcgaagcagaggagtattttcaaagagggagccattaataacggtgtcgatggcgagctg
tcgatgaagatcttcgatttggtggagaagttcgctggttacggttttaacaagtcgcac
tccgccgcttatgcgttggtttcctatcaaactttgtggcttaagacccactatccatcg
caatttatggcggcggtaatgtctgccgatatggataatactgacaagatcgtgacctta
gtcgatgagtgtgaccgcatgggcttgccgctgttacccccggatgtgaataaaggctta
tttagatttaccgtcgacgatgaccaaaaaattgtttacggcataggggcgattaagggc
gtgggcgaagggcctgtcgattcaattttaaaagcgcgtcaggatggaccttttaaagat
ctctttgatttttgtgcccgtatcgatttgaaaaagctcaataagagggtgattgaaaag
cttatctgcgcaggcgcattagacacattaggcccccatcgcgcctctatgatggcaacg
ctgcctgaggctattcgcgccgcagatcagcatgcaaaagccgaagcgataggtcagcat
gatatgtttggcttgctcaacagtgaacccgaagatagcaagcagcaatttgtcgaatgt
actccttggcctgataaaatttggctagaaggtgagcgtgaaaccttaggcctatatctt
acgggtcacccgatcaaccagtatcttaaagagttgaaacactacacctcaggtcgtctg
aaagatgttcatcctaccgagcggggtaaaaccatgaaagccgcggggcttgtggtggcg
acgcgagtgatgatgaccaagcgtggctcgaaaatggggctggtaaccttagatgataag
agcgcgcgtctagaggtgatgctgtttaccgaagcgtttgaaaagttcggtcacctatta
gagaaggaccggattttgattattgaaggtgaggtcagtttcgatgacttctctggcggt
aatcgtatgacggcgcgtaatattatcgatatgggcgaggcgcgaagtcattttgcgcag
gcagtagaggtcgatgtggaatctgactcaatcgataatcagtggttagagcgttttgag
caagccctcttaccatggaaacagggttctgtgcctgtggttattaactatgctcagcct
caggccaaggcacaatttaagcttggtgatgagtggcgggttaatcctaccgacgagtta
atgttggcactggagacattaacgggttccgataaggttaggatagtgttctaa
DBGET
integrated database retrieval system
