Shewanella mesophila: K0I73_07645
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Entry
K0I73_07645 CDS
T09171
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smes
Shewanella mesophila
Pathway
smes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I73_07645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_07645 (mfd)
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I73_07645 (mfd)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0I73_07645 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Peripla_BP_4
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYJ87554
LinkDB
All DBs
Position
complement(1753374..1756856)
Genome browser
AA seq
1160 aa
AA seq
DB search
MNAFSVLTPPKVKGVKTPQTLSQLHGAAQAITLANIGANYNGLTLVVTHDTPSALQLETE
LKYLLRPASVPVLLFPDRETLPYDSFSPHQDLVSQRLETLSRISTEKQSLVIVPISTLMV
RLPPQSFLTGNVLLLNKGDIYQLEQVRQQLVNTGYHLVEQVYEHGEFAVRGSIIDIFPMG
SNNPYRIELFDDEVESIRQFDPETQRSSGEIEGIRLLPAKEFPTDDAATEGFRQRYRRQF
DVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETATLFDYLPEQTQLVALGDLETAAKSH
LNEVAQRYENRRVDPLRPLLPPKDLYLLAEQVFQAFKQLPRLLCKGRDFQGTCIPAKVEA
LPDIASNHKLKQPLIALQEYANSGISILFCAESEGRREALIELLAKIEIKPQLFEHFNQF
AEKPAQFGLIVSPLSQGAIISGNKGKPWALVCETELFGQRISQQRRRDKQRQISNDALIK
DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYSGGDKLYVPVSSLNLISRY
SVGPDEEAHLNKLGNETWSKAKRKAIEKIRDVAAELLDVYARRQARPGEACQLDQQEYAQ
FASSFPYEETVDQETAIDAVLTDMCSPTSMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQV
AILVPTTLLAQQHYENFKDRFADWPIKIEVLSRFKTAKEQQAVLEQLTNGQVDIVIGTHK
LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLAVKTFVREYDDTTVREALLREILRGGQVYFLHNNVETIEKRARELEEL
LPEARVVTAHGQMRERDLEKVMADFYHQKYNVLVCTTIIETGIDVPSANTIVIERADHFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDARKRLEAIGALEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGREPSLDQMLRGQCEVDLRIPALL
PEDYVHDVNVRLSLYKRIANCKSENALDELKVELIDRFGLLPQATKNLLELTLYKHQATA
LGIAKIEMHAKGGSMEFRDDHIIDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTEADKDRL
ALLSLIISQLMQHRLGELRA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttctctgtccttacgcccccaaaagttaaaggggtaaaaacgcctcaaacc
ctaagtcaattgcatggcgcggctcaggcgatcaccttagcgaatatcggcgctaattat
aacggtttaacgttagtcgttacccacgacactcccagcgcgctgcagctggaaactgag
cttaaatatctgcttagaccagcatcagtcccggtgctcctgttcccagacagagagacc
ttgccttatgacagtttctcaccccatcaagatctggtatcacaaaggttagagacgcta
tctaggatctccaccgaaaagcagagtctagtgattgttccgataagcaccctgatggtg
agactgccgccgcaatcatttttaacgggtaatgtgctgctgctcaacaagggcgatatc
taccaactcgagcaagtgcgtcagcaattggtgaataccggttatcatctagtcgaacaa
gtttatgaacatggtgagtttgccgtacgaggctctatcatcgacattttcccgatgggc
tccaataacccctatcgtatcgaactcttcgacgatgaagtggaatctatccgccagttt
gatcccgaaactcagcgttcaagtggtgaaatagagggaattcgattactaccagcaaaa
gagtttcccactgatgatgcggctaccgaagggtttagacagcgttaccgtcgtcagttt
gatgtggtcgttaaagagccagaatctatctatcagatggtcagccgcaaagtaatgcct
gcgggtattgaaagctatctgccgctattttttgatgaaactgccaccctatttgactac
ctaccagaacagactcaactggtcgccctcggtgacttagaaactgcggcgaaatcccat
cttaatgaagtcgctcagcgttatgaaaatcgccgcgtggatcccttaaggccactattg
ccgccaaaagatctttatttacttgcagagcaagtatttcaagcatttaagcaattgcca
aggctactgtgtaagggacgagatttccaaggcacctgtattccagccaaagttgaagcc
ttgccagatatcgcctcaaatcacaaattgaagcagccgcttatcgccctgcaagagtat
gcaaactcaggtatttcaatcctgttttgcgccgaatcggaaggtcgacgcgaagcgctc
atagagctacttgctaagatagaaataaagccccaactatttgaacactttaatcaattt
gctgaaaaaccggcacaatttggcctaatcgtttcgcccttatctcaaggggctatcata
agtggtaataaaggcaaaccttgggcgctagtgtgtgagaccgagcttttcggtcaacgt
atttctcagcaacgcagacgagataagcagcgccagatcagcaacgatgcactcattaaa
gacttggccgagctaaaagtcggtcaacccatagtacatttagatcatggggtggcgctc
tatcaaggattagaaaccctagacactggagggcttgttgccgaataccttaaacttgag
tattcaggcggcgataaactctatgtccccgtctcttcgctaaatcttattagtcgctac
agtgtcggccccgatgaagaagcccatctcaacaaactgggtaatgaaacctggagcaaa
gcaaaacgcaaagcgattgaaaagatccgtgacgtcgccgcagagctgcttgatgtttat
gccagaaggcaagctagaccaggtgaagcgtgtcagctcgaccaacaagaatatgctcag
tttgccagcagcttcccctatgaagaaaccgtcgaccaagaaacggctatcgacgctgtg
ctcaccgatatgtgctcgcccacctcgatggaccgcttggtctgtggtgatgtgggtttt
ggcaaaaccgaagtggcaatgcgcgccgcattcgtggcggtaaatgatgataagcaggtc
gctattttagtccctaccaccctgctcgctcagcaacattatgagaactttaaggataga
tttgccgactggccgattaagattgaagtattgtcgcgttttaaaacggcaaaagagcaa
caagcggtactggagcaattgaccaatggtcaggtcgatatcgtcataggcacccataaa
ctgctgcaatccgaagccaaatttgaaaatttaggcctactgatcatcgatgaagaacac
cgttttggcgtgaggcaaaaagagaaaattaaggcccttagagcgaatattgatattttg
acgctcactgcaacccccatccctagaacgctcaacatggccatgtctggcatgcgagat
ctatcgattatcgctacgccaccagcgaaacgattggcggtaaaaaccttcgttagagag
tatgacgatacaacggtacgcgaggcactactgcgtgagatcttaaggggcggtcaagtt
tattttctgcacaacaatgtcgaaaccattgagaaacgcgcacgggaacttgaagagctg
cttcctgaggctagagttgtcaccgctcatggccagatgcgtgaacgggatctggaaaag
gtgatggctgatttttatcaccagaaatacaatgtattagtctgtacaactattattgaa
actggtatcgatgtcccaagcgcgaataccatagtcatagaacgcgccgaccactttggc
ttagcacaactgcatcagctgcgtggtcgagtgggccgctctcaccatcaagcctacgcc
tatttgatgaccccgcacccgaaacgaatgactaaagatgcacgcaaacgactcgaagcg
attggcgcccttgaagaccttggcgcgggctttatgctggcgacccaggatttagagatc
cgtggtgcaggtgaactcttaggtgatgaacaaagtggtcacatttcaaaaattggcttc
accttgtacatggagatgttggaagacgcggtaaaatcattaaaagagggtcgagagcct
tcgctcgatcagatgctgcgaggccaatgtgaagtcgacctacgtattcccgccttgctg
cctgaagactacgtacacgacgttaatgtccgtttatcactctataaacgaatcgccaat
tgtaagagtgaaaatgcactagatgagctaaaagtcgaactgatcgaccgctttggatta
ttgccacaagccacgaagaatctattagagttgaccctatacaaacatcaagcaacagca
ttaggcattgccaaaattgagatgcatgcgaaaggtggcagcatggaattcagggatgac
cacattatcgatccaggctttattattggcctactgcaaagtcagccacaaaattatcgt
atggatggcccaagtaagttaaaattccttatgcctactgaagcagataaagatcgttta
gccttattatcgctgatcatctcacagcttatgcaacatcgtcttggagaactacgtgct
taa
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