Shewanella mesophila: K0I73_08195
Help
Entry
K0I73_08195 CDS
T09171
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smes
Shewanella mesophila
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_08195 (hrpA)
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0I73_08195 (hrpA)
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I73_08195 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
SLFN-g3_helicase
NACHT
nSTAND3
WHD_HA2
nSTAND_NTPase5
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QYJ87655
LinkDB
All DBs
Position
1878181..1882062
Genome browser
AA seq
1293 aa
AA seq
DB search
MHLNSPLHPLSNAFLKLCYQTDASKIRRRLFRLNKQADSDKKRDELSKLEELAVAAAAKV
EQRREGRPEIRYPEELPISQKRDEIARAIAGHQVVIVAGETGSGKTTQLPKICLELGLGT
RGLIGHTQPRRLAARSVATRVAEELNSPLGEVVGFKVRFADAIKPSSYVKLMTDGILLAE
LTSDKFLDQYDTIIIDEAHERSLNIDFILGYLKNVLKKRPDLKVIITSATIDVERFSQHF
NNAPVIEVSGRTYPVETRYRPLVREQDEDLDLTEGIFAAVEELMQAGPGDILIFMNGERE
IRDVADQLNKQQYRDTEILPLYARLSYGEQSKVFKSHIGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVAPGICIRLYDELDFNNRPE
FTDPEILRTNLASVILQMLAIGLGDIEGFPFIQPPDSRYIRDGFLLLEELQSVQKNKGQL
QLTPLGRQLAAIPVDPRLARMVIQANEYGCLHETLVITAGLSIQDPRERPMDKKQAADEC
HRRFNDKDSDFMAWVNLWEHIKTEQKALSASQFRKLCKQEFLAYLRVREWQDLYAQLRQA
VHDLKWKLNSEPADYELLHKSLLTGLLSHIGFKDKDNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAEMTETSRLFARCCAKIQPEWVEPLAAHLVKRNYLEPHFEAKQGSVVALENQQLY
GLTIVNRRRTQYGPINPVEAREIFIRSALADGELRTNEAFFVKNRKLLEDIEALEHKSRR
RDILVDEQALVDFYEPRIPQGIYNAPKLLSWWKQQKKTNPDLLDFEREQLMKRGDEHVSA
LDFPDYWHQGNLKLSLSYHFEPADLDDGVSVHIPVALLNQIDNAGFDWLVPGLREEKCIA
LIKSLPKTLRRNFVPAPDYAKACLQAMNSTGMSLLDAMCKQLLRMSGMRISPDDFDTSQL
TAHLLINFKVEDDKGRLVAQSRDLESLKGQLQGQVTQAIRNVAETGIEQKQLTEWSFGAL
PKQYEKRKGNFEVKAFPALVDDKTSVSIALFDDENEAKRAHRSGLQRLLLINIPSPVKHL
QNTLPNKAKLAMYFNPFGQVQILIDDILSAAVQQLLDEKGLDVRSAEQFDSAKEWVRQEL
NPTAAKIALQVEEILTLYQKVKKRLKGKISLDIAFAMSDIQTQLDKLVFKGFVEQCGWQR
LADIVRYLKAIDNRLDKLPVDPNRDRLHLHSITNVQNLLDQQLAKVPRTSPVPEALLDAR
WMIEEYRVSCFAQVLGTAYPISEKRIINRINEV
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgcatttgaattcgccacttcatcccctgtctaatgcctttttaaagctgtgttatcaa
acagatgcgtctaaaataagacgtcgcctttttcgcttaaataagcaagctgactcagat
aagaagcgtgacgaattaagcaaacttgaagagctcgctgttgctgctgccgctaaggtt
gagcagcgccgcgagggtagacctgagatccgttatcctgaagagctacctatttcgcaa
aagcgagatgagatcgcccgagcgatagcgggtcatcaagtggtgattgttgcaggtgaa
acgggttcggggaagactacccagttacctaagatctgcttagagctaggcttaggtact
cgagggctgattggtcatactcaacctcgtcgtttagccgctcgcagcgttgccactcgt
gtggcagaggagctgaacagcccgcttggtgaagtggtgggctttaaggtgcgtttcgcc
gatgcgataaagccaagttcttacgttaaattgatgaccgatggtattttattggcggag
ctgacctccgataagtttctcgatcagtatgacaccatcattattgacgaggctcacgag
cgtagcctcaatatcgatttcatattggggtatctaaaaaatgttcttaagaagcgtccc
gatctaaaagtgatcatcacctcggcaaccattgatgttgagcgtttctcccaacatttc
aataatgcccccgtcattgaagtatccgggcgtacctatccggtggaaactcgctatcgc
ccgttagtgcgtgagcaagatgaggatctggatttaaccgaaggaatttttgcggcggtc
gaagaactgatgcaagcaggccctggcgatattttgatcttcatgaacggtgagcgagaa
attcgtgatgtcgccgatcagctgaataaacagcaatatcgtgatacagaaattctccct
ttatatgcgcgcctctcctatggtgagcagtcaaaagtatttaagagccatattggtcgg
cgtatcgtgttggcaaccaacgtggccgaaacctcgcttactgtgccaggtattcgatat
gtcatcgaccctggtacggcgcgtattagccgatacagctaccgcacgaaggtgcaacga
ctacccattgagcccatttctcaggccagtgctaatcagcgtcaaggccgttgtggtcgt
gtggcgccagggatctgtattcggctttatgatgagctagatttcaataatcgcccggag
tttaccgatccagagatactgcgaacgaatctcgcgtcggtgattttacagatgctcgct
attggactcggcgatatcgaaggcttcccctttattcaaccgcccgattcacgttatatc
cgcgatggttttttgctgcttgaagagctgcaatcggttcaaaaaaacaagggacagttg
cagttaacgcctcttggtcgccaattggcggctattcctgtggatcctcgacttgcacga
atggtgattcaagcgaacgaatatggctgtttacatgagacgttggtgatcaccgctggc
ttgtcgattcaagatccccgtgagcggccgatggataaaaagcaggccgccgatgaatgc
caccgccgctttaatgataaagattctgattttatggcatgggtgaatctctgggagcac
attaagacagagcaaaaagccttatcggctagtcaatttagaaagctgtgtaaacaggag
tttttagcctatttgcgtgtgcgcgaatggcaagacttatacgcccagctacgccaagcc
gtgcatgatcttaaatggaagctcaacagcgaaccagcagattatgaattgctgcataaa
tccttgttaacgggtttgttaagtcatattggctttaaagacaaagataatgagtattta
ggtgcccgtaaccgtaagttctttgtgtttccaggttctcctctagcaaagaaagggcct
aaatggatcatggcggcggagatgactgagacctcgcggctgtttgcgcgttgctgcgcc
aaaattcaacctgagtgggtagagccattagccgcgcacctcgttaagagaaactatcta
gagccccattttgaggcgaaacagggcagtgtagtcgcgctggagaatcagcagctttat
ggactcacgatagtgaatcggcgccgcactcaatatggcccgataaaccctgtcgaagcg
cgggagatctttattcgcagcgctcttgccgatggtgaattgcgtaccaacgaagccttc
tttgttaaaaaccgtaagttgctcgaggacattgaagcgttagagcataaatctcgtcgc
cgggatattttggtcgatgagcaggcgttagtggacttttatgagcctaggatcccgcaa
gggatctataacgcgcctaaactgctgagctggtggaagcagcaaaagaaaaccaatccc
gatctgctcgactttgaacgagagcagctgatgaagcggggcgacgagcatgtgtctgcg
ctggatttccccgactattggcaccaaggcaacttaaagttgagcctgagttaccatttt
gaacccgcagatcttgatgatggtgtctcggttcatattcctgttgcacttttaaatcaa
attgataatgcaggttttgactggctagttccgggtctgagagaagagaaatgtatcgca
ttaatcaagtcgctacctaagaccttacggcgtaactttgtgcctgcgcccgattacgcg
aaagcgtgtttacaggcgatgaattcgaccggtatgagtctactcgatgcgatgtgcaaa
cagctactacgcatgagcggcatgcggatctcacccgatgatttcgatacatctcaattg
acagcacacctgttgattaattttaaggtggaagacgataagggacggttagtcgcccag
agtcgcgatttagaatccctaaaaggtcaacttcaaggtcaagtgacgcaagcaattcga
aatgtcgcagagacaggcatagagcaaaaacagctcactgaatggagttttggtgcttta
cctaaacaatatgaaaagcgtaaaggtaactttgaggttaaagcttttcctgctctagtg
gatgacaaaaccagtgtgtcaatcgcgctgtttgatgatgaaaatgaggctaagcgagcc
catcgcagcggattgcagcgactgttattaatcaatattccctcaccggtgaaacatcta
caaaataccttgcccaataaagcgaagttggcgatgtattttaatccctttggccaagtg
cagatcttaattgacgatattctttcggcagcggtgcagcagctattggatgaaaaaggc
ttagatgttcgcagcgcagagcagttcgattccgcaaaagagtgggttcgccaagagctt
aatccgacagcggctaagatagctttgcaggttgaggaaattttgaccttatatcagaaa
gttaaaaaacgtttgaagggtaagatcagtctagatattgcttttgccatgagcgatatc
cagactcaactcgataagttggtctttaaaggatttgtcgagcaatgtggttggcagcga
ctggctgacatagtgcgctaccttaaagcgattgataatcgattggataaactgccggtc
gatcccaacagagatagattacatctgcacagtattaccaatgtgcaaaatctgctggat
caacagttggcgaaggtcccgagaacatcaccagtgccagaagcactgcttgatgcgcgt
tggatgatagaagagtatcgagtgtcctgttttgcacaggtattaggtacggcgtaccct
atttcagaaaagcggatcattaaccgaataaatgaagtttag
DBGET
integrated database retrieval system
