Shewanella mesophila: K0I73_10175
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Entry
K0I73_10175 CDS
T09171
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
smes
Shewanella mesophila
Pathway
smes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0I73_10175 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_10175 (recB)
Enzymes [BR:
smes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0I73_10175 (recB)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I73_10175 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QYJ84643
LinkDB
All DBs
Position
2328478..2332260
Genome browser
AA seq
1260 aa
AA seq
DB search
MASEKLNTLTLPFTGSRLIEASAGTGKTYTIAGLYIRLLLGHGIPEPLRCEQILVVTFTN
AATGELRDRIRKKIQLAYRRFIGMRVNDDLIEQLYQQTAEDALPLARKRLDLALKSLDEA
AIFTIHGFCQRILADMAFESALLFESEFTLDDSEFLHHAVRDFWRETCYPLPPYLAQIIQ
TKFSDPDALAQQLRPLLGASQAKASPEPSEFGALSAALTQSLNRLKLIWPRERDNIEQLL
HQLPLNGTRFGKKDQGYPKLAIMLEAMDNWARFSQSLPDLKVLDALSLNNLKLNKGGENP
TPERAPLLAHIENLHQLIKQFVPSFLFAARKGIFHRFAQQKTERNLLTPDDLLITLAGAL
TASPHLNAQGINPSTSEQTASDEAVTETQANIAAHSQTLAATIAKRFPIALIDEFQDTDP
LQYQIFSSIYQTTLSSPSDGAQSLLMIGDPKQAIYAFRGADIHTYIDARVNTEHHYSLDT
NFRSSRHMVEGVNQLFSQHQDPFISESIPFEHVAPSPFADEKRLIEATENNSALRIKLLS
EDPEKGLNKATARKSLAEDACNEIARLLIEAQNGKCFKSDSIKGDKPLKAKDIAVLVRDR
NEAAYIKTALSERQIGAVFLSRDSVFSTLEARELALVLIAIANPKDERALRSALATQLLG
FDAAEIHQFNHQEESRQTLLEQFYELHQIWQRRGVMPCLLAMARDTHLIERLLTTEEGQR
RLTDFRHLGELLQQKATELDGINALLNWYQQALLESHSTEEAQLRLESEQNLVQIVTIHK
SKGLEYPVCFVPFVSLARDNRRRPAPMLYHQDNELIWDIEQTDDGWSLSKRENLAEDLRL
LYVALTRPVLACYLYIANHSRFTKKAGITSQLHETAIGYLLGIEDANCEIGDIETKAQKL
KSQAISVNLIESIADATPLPQVVSDSQILAPKPLQRTLSTPWRVGSYSGLVKDMPHERVS
PGSDDEAFAALEMIDDDRELQASRFTFERGANAGSFMHLVLELIDFTKAEQDLSEQLPTA
MEKYGIDSSWQDILQQWYLDLLRAPLTCHDQHSNAGHPSAEHNRSAHELSLSQLSPKHTM
VEMEFYLPISTLQAHALNQLLAEYGYKMSLSFDTLQGMLKGFIDLTFEHNGQFFIADYKS
NHLGDDVSCYQRPQMQHAITSHRYDLQYIIYTLALHRYLSVRLPRYDYDSHIGGCYYLFL
RGMSAQAPSCGVFYDKPPKALIERLDQLLKQPQAATPLVKDEATDAPANQSIPQQTELDL
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgaaaaactcaataccttaaccctgccatttaccggctcacgtttaattgaa
gccagcgcaggcacaggaaaaacttataccattgctgggctctatatacgcttgctgcta
ggtcacgggatccctgagccgcttcgctgcgaacagatcttggtggtgaccttcaccaac
gctgcaacgggagagttacgggacaggatccgcaagaaaattcaactcgcctatcgtcgc
tttatcggtatgcgagtcaacgatgatctgattgagcaactttatcaacagacggcagaa
gacgccctaccactggcacgtaaacgcttagatttagcgctcaagtcactcgatgaagcg
gctatttttactatccatggtttctgccaacggatcctcgccgatatggcgttcgaatct
gcgttgctatttgaatcagagttcaccttagatgacagcgagtttttacatcatgccgtt
agggacttttggcgtgagacctgctatccattgccgccctatttagcacagatcattcaa
acaaagtttagcgatcccgatgcattggctcagcaactacgtccgttattgggagccagc
caagccaaagccagccctgagccgagtgaatttggtgccctgtctgccgcgttaactcag
agcttaaatcgacttaaactgatctggccaagagagagggataacatagagcaacttttg
catcagctccctctcaatggcactcgatttggtaagaaagatcagggttaccccaagctc
gcaatcatgcttgaggcgatggacaactgggctaggtttagccaatcactgcccgatctc
aaggtgttagatgccctgtctctcaataacctaaagctgaataaaggcggggagaaccca
acgcctgagcgggcgccattactcgcgcacattgaaaacttacatcaattgattaagcaa
tttgtacctagctttctatttgcggcgcgtaagggaatattccatcgttttgcgcagcag
aaaacggagcgaaacctgctcacaccggatgatctgttaatcaccctcgctggtgcgctg
acggcatcgccgcatcttaatgctcaaggcattaatccaagcacaagtgagcaaaccgct
agtgatgaagcggtaactgaaacgcaagccaatatagccgctcacagccaaaccttagcc
gcgacgattgcaaagcgctttcctattgcactcatcgatgagtttcaggacactgatcca
cttcaatatcaaatatttagtagtatctatcaaacgacactgtcgtcaccttctgatggc
gctcaaagccttttgatgattggcgatcctaaacaggccatttatgcctttaggggcgcc
gatattcatacctatatcgatgcccgcgttaacaccgagcaccattacagtctcgatact
aatttccgctctagtcgtcatatggttgagggtgtcaatcagctatttagccagcatcaa
gacccttttatcagtgagtctattccatttgagcatgtggcaccgtcaccatttgccgat
gagaagcgcttaatcgaagcaacggaaaataatagtgcactgcgcatcaaactccttagt
gaagatcccgaaaaaggattaaataaagcgacggcaagaaaatcgctagctgaagatgcc
tgtaacgaaattgcgcgactattgatcgaagcacaaaatggtaagtgctttaaaagtgac
agcattaaaggtgataagccactaaaagctaaagatattgcggtattggtgagagacaga
aatgaagcggcttatattaaaaccgcactgagcgaacgccaaattggggcggtttttctt
agccgagatagtgtgtttagcacgctagaagcccgtgaattggcgctcgtactcatcgcc
attgcaaatccaaaagatgagcgggcgctgcgcagtgcattagccactcaattacttggc
tttgacgccgcagagatccatcaatttaatcaccaagaagagagtcgccaaaccctgcta
gagcagttttatgagttgcatcaaatatggcaacgccgcggcgtaatgccgtgtctgctc
gcgatggctagagacacccacctgattgagcgtttgttaacgactgaagagggtcaacga
cggttgacagattttaggcacttgggagaactactacaacaaaaggccaccgagctagat
ggtattaacgccctgctcaattggtatcaacaagccttactcgaaagtcacagcacagag
gaagcgcagcttaggcttgaaagcgaacaaaacttggtacaaatcgtcactatccataag
agtaaagggcttgagtacccagtttgtttcgttccttttgtcagtttagctcgggataat
cgccgaagacccgcccctatgctgtatcaccaagacaacgaattaatatgggatattgaa
caaaccgatgacggttggtcacttagtaaacgtgaaaatttagcagaagatctgcgtcta
ctatacgtagccctgacccgtcctgtactggcctgttatctctatatcgctaaccatagt
cgttttactaaaaaagcgggcattaccagtcagctacatgagaccgccataggttatctg
ctggggattgaggacgctaactgtgagattggtgatattgaaactaaagctcaaaagctg
aaaagtcaggcgattagcgtcaatttgattgaatctatcgccgatgcgacaccattgccg
caagtcgttagtgacagccaaatcctagcgcctaaacccttgcaacgcacactctccacg
ccttggcgcgttggcagttactctggtctggttaaagatatgccccatgagcgagtgtcc
cccggcagtgacgatgaagcatttgccgcgctggaaatgatcgacgatgacagggagcta
caagcttctcgctttacctttgagcgcggggccaatgccggtagctttatgcatttggta
ttagagcttatcgattttaccaaggccgagcaggatctcagcgagcaactgccaactgcg
atggaaaaatatggcatcgacagcagctggcaggatattttgcagcaatggtatctcgat
ctgctacgcgcaccgcttacctgtcatgatcaacattctaacgccggacatcctagcgca
gaacataatcgctcggcacatgagttatcacttagccagttatcacctaaacataccatg
gtggaaatggagttttatctgcccatttcaacactccaggcgcatgcacttaatcaactg
ctagcagagtatggctacaagatgtcactatcatttgacaccttacaagggatgttaaaa
ggctttatcgatttaaccttcgagcataatggccagttttttatcgccgattataaatct
aatcatttaggcgacgatgttagttgttatcaacgacctcagatgcaacacgcgatcact
agccatagatacgacttgcagtacattatctacaccctcgcgctccatcgctatttaagc
gtgcgtttgcctcgctacgactatgatagccatataggcggttgctattacctatttcta
cgcggtatgtcagcccaggcgccaagctgcggcgtgttttacgacaagccgcccaaagcg
ttaatcgaacgactcgatcaactgttaaagcaacctcaggccgcaactcctttggtaaaa
gatgaagccactgatgcccccgctaatcagtcaatacctcaacaaacggagctagaccta
tga
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integrated database retrieval system
