Shewanella mesophila: K0I73_10180
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Entry
K0I73_10180 CDS
T09171
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
smes
Shewanella mesophila
Pathway
smes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0I73_10180 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_10180 (recD)
Enzymes [BR:
smes01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0I73_10180 (recD)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I73_10180 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
SH3_13
AAA_11
NAT10_TcmA_helicase
AAA_22
UvrD-helicase
TraI_hel_assoc_N
UvrD_C
nSTAND3
SLFN-g3_helicase
AAA_16
DEAD
AAA_28
TrwB_AAD_bind
AAA_5
NTPase_1
SRP54
PhoH
T2SSE
AAA_25
FtsK_SpoIIIE
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QYJ84644
LinkDB
All DBs
Position
2332257..2334194
Genome browser
AA seq
645 aa
AA seq
DB search
MIELHKPLGDLLKEWQALRILTPLDRHFALQMTSLHPQSTPLFTLICALLSRQLSLQHTC
LPLEQINLANPLSEQHPQCSITAPLQAIIDTLTASDAVGLAPTQLDKPLILDGSLLYLQR
YYQFESKVGEKLNTLSQVIELNDIESSTHMLSSLFPDNDMQYDWQKIATATALTQKLAVI
TGGPGTGKTTTVTKLLLLLCQQSPMTIRLVAPTGKAAARLSESIKASKARLVNELAPYAD
IVDLDKLALVPEEASTLHRLLGVIPNSHRFRHHSDNPLRLDLLVVDEASMVDLPMMYKLL
DALPAHARLILLGDQDQLASVEAGAVLADICAGLKVEAEQPANNAKWTMRYSSDKAMQLS
KLTTTDLSPFISSQPKLGDSLAMLMHSHRFKGDAGIGLLAAAVNGSDLGQIKQVWQRGYQ
ELLWIEHQPTTQTNLGLNELLTLTVEQYRHYLSAIIDSQHSPVEIIERFNQYRILCAMRA
GEYGVDGINASVTQALSDAKLITPHGEFYAGRPIIIQSNDYNLGLFNGDIGVILPDSEHH
QRLMAHFVQADGCLLKVLPARLPTHDTCFAMTVHKSQGSEFNQVALVMPLKPSVAQRQLL
TKELVYTAITRAKEHFTCLGSQRVFEQACKQATQRASGLAKRLWQ
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgatcgagcttcacaagccattaggcgacctattaaaagagtggcaagcactgcgtata
ttaacaccgcttgatcgccattttgcactgcagatgaccagcctacatccgcagagtacg
ccgctgtttacgcttatctgcgccctactgagtcgccagttgtctttgcaacacacctgt
ttgcccctagagcagattaatttagccaacccgctgagtgagcagcacccacaatgcagc
atcacggctccgctgcaggcgattattgacaccttaaccgcatcagatgcggtcggttta
gcaccaacacagctggataaacccttaatcctcgatggttcattgctctatttacagcgt
tattatcaatttgaatctaaggtgggagaaaagcttaacacactgtcacaagtcattgaa
ttaaatgatattgagtcatcgactcacatgctaagcagtctctttcctgacaacgatatg
caatatgattggcagaagatcgccaccgcaacggcactgacgcaaaaactggcggtgatc
acaggtggtcctggcacaggtaaaacgacaaccgtcaccaaactcttgttgcttttgtgt
cagcaaagcccaatgacgatccgcttagtcgcgccaacgggcaaggccgcagccagatta
agtgaatcgatcaaagcctcgaaggcgcgactggttaatgaattagcgccatatgcagat
atcgtggatctcgataaactcgcccttgtcccggaagaagcatcgacacttcaccgatta
ctgggagtgatccccaactctcatcgtttcaggcaccatagcgacaatcctttaaggcta
gatttgttggtggtggatgaagcctctatggtcgatctgcctatgatgtacaagttactc
gacgccctgcccgcccacgcacgactgatattgctaggcgatcaggatcagcttgcctcg
gtagaagcgggcgcggtattggccgatatctgtgcaggcttaaaagttgaggctgagcag
ccagccaataatgccaaatggaccatgcgttactctagcgataaggccatgcagctgagt
aagctgaccacgaccgatttaagcccgttcatctcatcacagcccaaacttggcgatagc
ttagccatgctgatgcacagtcatagatttaagggcgatgcgggtattggattgcttgcc
gcggcggtcaatggcagtgatctcggccaaataaaacaggtttggcaacgcggttatcaa
gagctgttatggattgaacatcaaccaacgacgcaaactaatcttggcctgaatgagcta
ctaactctcactgttgagcaatatcgacattatctgagtgcaatcatcgacagccagcat
tcaccagttgagatcattgaacgctttaaccaataccgaattttatgcgctatgcgtgca
ggtgaatatggcgtagatggcataaatgcctcggtaactcaggcattgtctgatgccaaa
ctcatcacgccacacggtgagttttatgctggacgtcccattatcatacaaagcaacgat
tacaatctcgggctatttaatggcgatattggcgtcattttacctgatagcgaacatcat
cagcgattaatggcgcattttgttcaagccgatggctgcctactcaaagtgctaccagca
agactccccactcacgatacctgctttgctatgacagttcacaaaagccaaggcagtgaa
tttaaccaagtcgccttggtcatgccactcaagccgagcgtcgcccaacggcaattgtta
acaaaagagctggtctacaccgcgatcactcgggcgaaggaacattttacctgtttaggc
agtcaacgtgtattcgagcaagcgtgtaagcaagccacacaacgcgcatctggcctcgcc
aaacgtttatggcaatag
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