Shewanella mesophila: K0I73_12530
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Entry
K0I73_12530 CDS
T09171
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10943
two-component system, response regulator FlrC
Organism
smes
Shewanella mesophila
Pathway
smes02020
Two-component system
smes02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0I73_12530
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0I73_12530
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
smes02022
]
K0I73_12530
02035 Bacterial motility proteins [BR:
smes02035
]
K0I73_12530
Two-component system [BR:
smes02022
]
Other families
FlrB-FlrC (polar flagellar synthesis)
K0I73_12530
Bacterial motility proteins [BR:
smes02035
]
Flagellar system
Flagellar assembly proteins
Others
K0I73_12530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA_16
HTH_30
AAA_19
AAA
nSTAND3
HTH_50
HTH_24
MerR
AAA_7
AAA_14
AAA_22
FleQ
AAA_3
HTH_11
HTH_28
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
QYJ85050
LinkDB
All DBs
Position
complement(2834854..2836206)
Genome browser
AA seq
450 aa
AA seq
DB search
MAEAKILLVEDDASLREALVDTLLLAQYECVDVESAEEAIVALKSHHFDMVISDVQMEGI
GGLGLLNYLQQHCSQLPILLMTAFATIDNAVSAIKLGAVDYLAKPFAPEVLLNQVSRYLK
PKLVENQPVVADEKSLALLALAQKVANSEASVMILGPSGSGKEVLARYIHQHSSRRDSPF
VAINCAAIPENMLEATLFGYEKGAFTGAYQACPGKFEQAQGGTLLLDEISEMDLGLQAKL
LRVLQEREVERLGGRKTIKLDVRVLATSNRDLKAYADKGEFREDLYYRINVFPLTWPALH
QRPADILPLARHLVLRHAKQAGLAQAPELDEAASRRLLAYRWPGNVRELDNVVQRAMILQ
SGELITANDIIIDTQDVVIDPAFLNATADKLSEPEGLGDELKAQEHVIILETLSQCKGSR
KLVAEKLGISARTLRYKMARMRDAGIQIPA
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagcaaaaatcctactggtagaagatgatgcttcattaagagaagcattggtg
gataccttactattagctcaatatgagtgcgtcgatgttgagtctgccgaagaagctata
gtggcgctaaaatcgcatcattttgacatggtgatcagcgatgtgcagatggagggtatt
ggtggcttagggttactcaattatttacaacaacattgtagccaactgcccattttatta
atgacggcgtttgcgacaatagataatgccgttagcgcgataaaacttggcgctgttgac
taccttgccaaaccatttgctccagaggtattgctaaatcaagtatctcgttaccttaag
ccgaaattggttgagaaccagcccgttgttgccgatgagaaaagtttagcattattggca
ttagcacaaaaggtggctaattctgaagcttcagtcatgattttagggccgagtggatcg
ggtaaagaggtattggctaggtatatacatcaacatagtagccgtcgtgatagtcctttt
gttgcaataaactgcgcagctatacctgaaaatatgcttgaggcaacgctttttggatat
gagaaaggggcgtttaccggagcgtaccaagcgtgtccagggaagtttgagcaagctcaa
ggcggtaccttactgcttgatgagatttccgaaatggatttggggttacaagctaagcta
ctgcgcgtactacaagaacgtgaagttgaaaggttaggcggtcgaaaaacgatcaagctc
gatgtgagagtgttagccacctcaaaccgagatctaaaagcctatgctgataagggagag
tttcgcgaagacctctattatcgtatcaatgtattcccattaacatggcccgcgcttcat
caaaggcctgccgatatattgcctttggcgcggcatctagtgctgaggcatgccaagcaa
gctgggcttgctcaagcccctgagcttgatgaggctgctagtcggcgattacttgcctat
cgatggcctggtaatgtgcgtgaattagataatgtggttcagcgggcgatgattttacag
tctggtgagctaattacagcaaacgatattattatcgatacccaagatgtggtgatagat
ccagcatttttaaatgctactgccgacaagctgagcgagccagaagggcttggggatgaa
ttaaaagcgcaggaacatgtcattattttagaaacattgtctcaatgtaaaggcagtcga
aagttggttgctgaaaagctagggatcagtgctcgaaccctcaggtataagatggcgaga
atgagagatgctggtatccaaatccccgcgtaa
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