Shewanella mesophila: K0I73_15475
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Entry
K0I73_15475 CDS
T09171
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smes
Shewanella mesophila
Pathway
smes03410
Base excision repair
smes03430
Mismatch repair
smes03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K0I73_15475 (recJ)
03430 Mismatch repair
K0I73_15475 (recJ)
03440 Homologous recombination
K0I73_15475 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_15475 (recJ)
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K0I73_15475 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K0I73_15475 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K0I73_15475 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QYJ85574
LinkDB
All DBs
Position
complement(3489178..3490902)
Genome browser
AA seq
574 aa
AA seq
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MIHKIVRRPKVDDNHLPAHLSPILKQAYASRGCSDADCELALANLLRPDTMKGLDVAAKI
IADAIANNRKILIMGDFDADGATSTCVCLLALRMMGAQQVDYLIPNRFDYGYGLSPEIVT
VAYQKGAQLLITVDNGISSIEGVAAAKALGMDVVITDHHLPGKTIPDADAIVNPNQAECQ
FASKSIAGVGVAFYLMSALRAELRVRDWYHQLAIAEPNLASLLDIVALGTVADVVSLDTN
NRILVDAGLKRVRAGRCRPGITALLEVAKRNTSRIVASDFGFAVGPRLNAAGRLDEMALG
VETLLCDDIMLARRMASELDSLNAERRDLETDMQQEALKSLEALALDESDLPWGIALYQS
DWHQGVIGILASRIKDRYHRPVIAFAEANEGEIKGSARSIKGLHMRDLLELINARHPGMI
IKFGGHAMAAGLSLRAGEFGRFAKAYDEAVRELLASEQLTGEIISDGELLPHQMTMDLAR
ELRSAGPWGQNFPEPVFDGYFRVVQQRIVGERHLKLVLETECGQTMVDAIAFNVDLKTWP
DATIQFAQVAYKLDINEFRGNESLQFMVEQIEPK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgatccataagatagttcgccgtcctaaggtcgatgataatcatctaccagcccatctt
tctcccattttaaaacaggcctatgccagccgtggttgtagcgatgccgattgcgagtta
gcgctggctaacctattgcgtcccgacaccatgaaaggccttgatgttgccgctaagatc
attgccgatgcgatagccaataaccgcaagatcttgatcatgggcgatttcgatgccgat
ggcgcgacatcaacctgtgtctgcctgttagcgctgcgaatgatgggcgcgcagcaggtg
gattacctcattcccaaccgctttgattatggctatggcctgagtcctgagatagttact
gttgcctatcaaaaaggggcgcagctgctgatcactgtcgataacggtatctcatcgatt
gagggggtcgcggcggccaaagcgctggggatggatgtggttatcacagatcatcactta
ccgggtaaaaccattcccgatgccgatgcgatcgtcaaccctaatcaggccgagtgtcag
tttgccagtaaatcgatcgcaggggttggggttgctttctatctgatgtcagcgcttcgc
gccgaactgagggtgcgagattggtatcatcagttagctattgctgagcctaacttagcg
agcctactcgatattgttgccctaggtaccgtggccgatgtggtgtcgctcgataccaac
aaccggattttggtcgatgcgggcttaaagcgggtacgagcaggacgttgccgcccaggg
atcaccgcgttactcgaagtcgctaagcgcaatacctcacgcattgtcgcatctgatttc
ggctttgccgttggcccacggctgaatgccgcagggcgtttagatgagatggcgctgggc
gtcgaaaccttattgtgtgatgacatcatgctagctcggcgtatggccagtgaactcgat
agtctaaacgccgagcgacgtgatctcgagactgatatgcagcaagaggcactaaaaagc
ctagaagcgttagcgctggatgaatcggacctaccttggggaatcgcgctctatcagagc
gattggcaccaaggggtgatcggtattttagcttcacgcattaaagacagatatcaccgc
cccgttatcgcctttgccgaggcaaacgagggcgaaattaaaggctcagcgcgctcgata
aaaggcttgcatatgcgcgacctacttgagctgatcaatgccagacatccgggaatgatc
atcaaatttggtggtcatgcgatggcggcgggattatcccttagagcgggtgagtttggc
cgttttgccaaagcctatgatgaagcggtgcgagagctattggcatcagagcagttaacc
ggagagatcattagcgatggtgagcttttacctcatcagatgaccatggatcttgctcga
gagttacgaagtgcaggtccttgggggcagaacttccctgagccagtatttgatggctat
tttagggtggtgcagcagcgcatcgttggtgagcgtcatctcaaactggtgctggagact
gagtgtggccagactatggtcgatgcgatagcctttaatgtcgacctgaaaacctggccc
gacgccaccatccagtttgctcaggtagcttataagctggatattaatgaatttaggggc
aatgagagtctgcaatttatggtggagcagatagaaccaaagtga
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