Shewanella mesophila: K0I73_15830
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Entry
K0I73_15830 CDS
T09171
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_15830 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_15830 (pcnB)
Enzymes [BR:
smes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
K0I73_15830 (pcnB)
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0I73_15830 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF6932
Motif
Other DBs
NCBI-ProteinID:
QYJ88112
LinkDB
All DBs
Position
3571381..3572769
Genome browser
AA seq
462 aa
AA seq
DB search
MFRRISQFCKQLFDDNQNTTETTQAGLSLEIVARKNHAISRKQISENAIKVLYRLHKAGF
KAYLVGGGVRDILLGLEPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEV
ATLRGHHVDNEEKISKVNAEGRLLRDNVYGTIDEDAERRDFTVNALYYDISDFSIHSYGG
GLQDLESRTLRLIGDPQKRYREDPVRMLRAVRFATKLGMDIDKGAADPIYELAPLLKDIP
AARMYEEVLKLFFNGQAQNNYTMMREYGLFEPLFPLVENVLVEDPHGPATKMNNAIMRNT
DQRVLADKTVTPAFFYAAMLWYPLSQRADDIAVESGLSTYDAFYAAMGDVMEQQCRSISI
PRRFSTPAKDIWQLQLRFDRNQGTRAFKFIEHPKFRAAYDLLLLRAEAEGGNLTKSAAWW
KSFVEGSEEQRSVIARSTAKGNRNRNNNRRRRSPKKTTKPEE
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atttttcgccgtattagtcaattctgtaagcagctttttgacgacaatcaaaacacaaca
gaaaccacacaagcgggactaagcttggagatcgttgcaagaaaaaatcatgcaatttct
cgtaagcagattagcgaaaacgctataaaggtactctaccgactgcataaagcaggcttt
aaagcctatcttgtcggtggtggggtgcgtgacattttactgggcctcgaacctaaagat
ttcgacgttgtcaccaatgcgacgcctgaagagatcaaaagattatttcgaaactgtcgc
ctagtcggtcgtcgattccgtctggcccatattgtctttggccgtgatgttatcgaagtt
gcgaccctacgtggccaccatgtcgacaatgaagagaagatctccaaggtcaatgcagaa
ggtcgactactgcgtgacaacgtgtacggcaccatagatgaagatgctgagcgccgcgac
tttaccgttaatgctctctattacgatatcagtgacttttcgatacacagttatggtggc
ggattacaagatttagaatctcgcacccttcgcctgattggtgatccgcaaaagcgctac
cgtgaagatccggttcgtatgctcagagccgtgcgttttgccactaagctagggatggac
atagataaaggtgctgccgaccctatctatgaactcgcgccactgcttaaagatattcca
gccgctcgcatgtatgaagaggtgttgaaactcttctttaacggtcaagcgcagaataac
tacactatgatgcgtgaatatggcttatttgagccgttattcccattagttgaaaatgtc
ttagtagaagatcctcatgggcctgccactaagatgaacaacgccatcatgcgtaacaca
gatcaacgggtactggccgataaaacggtcaccccagcattcttctatgcggctatgtta
tggtatccactgagtcaacgcgccgatgatatagcagtagaaagcggcctaagtacctat
gatgcattctatgccgctatgggtgatgtgatggagcagcaatgtcgctcaatcagtatt
ccccgtaggttcagtacaccagcaaaagatatttggcagttacagttacgtttcgaccgt
aatcaaggcactcgcgcatttaagttcattgagcatcccaaattccgtgctgcctacgat
cttctgttacttcgcgccgaagctgagggtggcaatttaaccaagtcggcggcatggtgg
aagagtttcgtcgagggcagcgaagagcagcgcagtgtgatcgcacgaagcacagccaaa
ggcaatcgcaaccgtaataacaatcgtcgccgccgctcaccgaaaaaaaccactaaacca
gaagaataa
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