Shewanella mesophila: K0I73_16505
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Entry
K0I73_16505 CDS
T09171
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_16505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_16505
03009 Ribosome biogenesis [BR:
smes03009
]
K0I73_16505
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I73_16505
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I73_16505
Ribosome biogenesis [BR:
smes03009
]
Prokaryotic type
rRNA helicases
K0I73_16505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QYJ85755
LinkDB
All DBs
Position
3744488..3746296
Genome browser
AA seq
602 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQSASIEPLMARKDILGQAQTGTGKTGAF
ALPLLNAIDPASNTPQILVLAPTRELAVQVAEAFGSYSKFMKGMHVLPIYGGQSMHQQLN
ALRRGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEMLKMGFIDDIEWILEHTPKQ
RQLALFSATMPEQIKRVANKYLSEPVHVKIAATTTTVETIEQRFVQVSQHNKLEALVRVL
EVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDIII
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMDVPSPETVTERRLSRLGEQIGEVIAKDSLDFMKGAVAQLCQELEVDTDV
LAAALLQQVQKDRPLQLPPINERQRDRSDDRSSRDRGERGDRAPRERTRRDSRPTPTNLG
KADSLKDNPDVKMCRYIIDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDSMTAIDL
PDGMPKDVLQHLKKVRVCGKPLNIREAGTELPASSGDDSRPPRRRKPAGDRKPHRKGGKD
NA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctttccgagcctttgttgcgtgct
cttgacgagctaggttatgaaaaaccaacgccaattcaatctgctagtatcgagcctctt
atggcccgtaaagacattttaggtcaggcgcaaacaggtacaggtaaaaccggtgctttt
gctcttcccctattaaatgcgattgatcctgcatcaaatacaccacagattttagtatta
gcgccaactcgtgaacttgccgtgcaagttgccgaagcctttggtagctattcaaaattc
atgaaaggtatgcatgtactgccaatttacggcggtcaaagcatgcaccagcaacttaac
gcattgcgtcgtggcccacagatcatcgtgggcacaccaggccgtgttatggaccacatg
cgtcgtggcactcttaagttagagtcactaaaagcaatggtacttgatgaagccgatgag
atgctaaaaatgggcttcatcgatgatatcgaatggatccttgagcatacgcctaagcaa
cgtcagttagcgctgttctctgccactatgccagagcaaattaagcgtgttgctaacaaa
tatttatctgagcctgtacacgttaaaattgcggcgacaaccactactgttgaaaccatc
gaacagcgttttgtacaagtatcacagcacaacaaactcgaagcacttgtgcgcgttcta
gaagttgaaaagaccgaaggtattattatcttcgttcgtactcgtaacagctgtgtcgag
ctcgccgaaaagctagaagctcgcggttatgcatcatcaccgctacatggtgatatgaac
caacaagcacgtgaacgtgcggttgaccagcttaagcgtggcaagttagacattattatt
gctactgacgttgcggctcgtggtcttgacgttgaacgtattggacacgtagtaaactac
gatattccatacgatacagaagcttacgttcaccgtatcggccgtacaggtcgtgctggt
cgtacaggtatggcaattctattcgttacacacagagagatgcgcatgttgcgcaccatc
gaacgtgcaaccaatagccgtatctcaccaatggacgtaccaagcccagagacagtaaca
gagcgtcgtctttcgcgtttaggtgagcagattggcgaagtgattgctaaagattcttta
gactttatgaaaggcgctgtagcacaactatgtcaagagctagaagtcgatacagacgta
cttgcagccgctttactgcaacaagttcagaaagatcgccctctacagttgcctccaatc
aacgaacgtcagcgcgacagaagtgatgaccgtagctcgcgtgaccgtggtgaacgcggc
gatcgtgctcctcgcgaacgtacccgtcgcgactcacgtccaacgccgaccaacctaggt
aaagctgattctcttaaagacaatccagacgttaagatgtgtcgctatattatcgatgta
ggtcgtgatcatggtgttggagttggtaacattgttggcgccgtagctaacgaagctaac
atcgacagtcgttatattggtcaaatccaattatttgattctatgacagcgattgaccta
ccagacggtatgcctaaagatgtactacagcacctaaagaaagttcgtgtttgtggtaaa
ccgctaaacatccgtgaagctggtactgaactcccagcaagcagtggtgatgacagccgt
ccaccacgtcgccgcaagccagctggcgaccgtaaaccacatcgtaagggtggtaaagac
aacgcataa
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