Sulfuracidifex metallicus: RQ359_000113
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Entry
RQ359_000113 CDS
T09529
Symbol
rrp4
Name
(GenBank) exosome complex RNA-binding protein Rrp4
KO
K03679
exosome complex component RRP4
Organism
smet
Sulfuracidifex metallicus
Pathway
smet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RQ359_000113 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smet03019
]
RQ359_000113 (rrp4)
Messenger RNA biogenesis [BR:
smet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RQ359_000113 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
RQ359_000113 (rrp4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ECR1_N_2
S1_RRP4
KH_1
S1
RRP40_S1
KH_6
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WOE51899
LinkDB
All DBs
Position
88264..88992
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AA seq
242 aa
AA seq
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MIVQPRAIVAPGDIIAEGEIKVGWSPYFLRVGDKYISTVVGMVNVKDSSFEVIPLEGSFY
YPKVGDTVIALIKDIEPYGWSTDIKAPYSAYLPASSLLGRPVNSGEEIRKFMDIGDYVVA
KVEAFDRTTDPILSLKGGKDLGRINSGIVIDFMPIKVARIIGKGRNMIETLSTETGCNIF
VAQNGRLLANCPSKASEELLIFAIRKIEEESHIKGLTDKIKQLIREKAGGISASNAETKV
NS
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgatagtacagcccagagctatagtggctcctggagacattatagcggaaggtgaaata
aaagtaggatggtccccttactttctaagagtaggcgataaatacatttctacagtagtc
ggaatggttaatgttaaggattcttcgtttgaggtaattccgttagaaggttccttctac
tatcctaaagtaggcgatacggtaatagctttgataaaggatatagagccttatggatgg
agtacagatataaaggcaccttattcagcgtatcttccagcatcatctctgttaggtaga
cctgtaaactctggagaagaaatcaggaaatttatggatataggtgattatgtagttgct
aaagttgaagccttcgacaggacaactgatcctattctctccttaaagggaggaaaagat
ttaggaagaataaattctggaatagtaattgatttcatgcctataaaggtagccagaata
ataggaaaaggtaggaacatgatagaaaccttgtctactgaaactggttgtaatattttt
gtagctcagaatggtagacttttagctaattgcccatctaaagcttcagaggaactccta
attttcgccataagaaagatagaggaagagtcacatattaaaggtcttactgataagata
aagcaattaataagagaaaaggcaggtggtataagtgcttcaaatgcagaaaccaaggtt
aattcttga
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