Sulfuracidifex metallicus: RQ359_000423
Help
Entry
RQ359_000423 CDS
T09529
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smet
Sulfuracidifex metallicus
Pathway
smet04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
smet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RQ359_000423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smet03019
]
RQ359_000423
03009 Ribosome biogenesis [BR:
smet03009
]
RQ359_000423
04131 Membrane trafficking [BR:
smet04131
]
RQ359_000423
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smet04147
]
RQ359_000423
Messenger RNA biogenesis [BR:
smet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RQ359_000423
Ribosome biogenesis [BR:
smet03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RQ359_000423
Membrane trafficking [BR:
smet04131
]
SNARE
SNARE associated proteins
Others
RQ359_000423
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RQ359_000423
Exosome [BR:
smet04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RQ359_000423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
TIP49
AAA_33
AAA_14
nSTAND3
AAA_28
RNA_helicase
Vps4_C
AAA_18
IstB_IS21
Mg_chelatase
AAA_24
AAA_3
ABC_tran
AAA_7
NACHT
AAA_25
DUF815
AAA_17
TsaE
NPHP3_N
ATPase
ATPase_2
Sigma54_activat
Zeta_toxin
Parvo_NS1
AAA_19
ATP-synt_ab
NB-ARC
AFG1_ATPase
PhoH
AAA_11
ORC-CDC6-like
TraI_2
Motif
Other DBs
NCBI-ProteinID:
WOE51166
LinkDB
All DBs
Position
356909..359161
Genome browser
AA seq
750 aa
AA seq
DB search
MSSNGIRLRVSEARQRDVGKKIGRLTFNIMNKLGVDSGDYVEVVGPSGSSIVQAMPTYDV
SDSEIKIDGYVRKAIGVSIGDEVTVKKASVSPANKVVLAPTQPIRFDQSFVNYVKELLTD
KPLSKGETIPIPIYTGSLDLVVINTTPSNSVYVTSNTAIEIREEPVKEQASFPKVTWEDI
GDLEDVKSKIREIVELPMKHPEVFQHLGIEPPKGVLLYGPPGVGKTLLARALANEIGAYF
TSINGPEIMSKFYGESEQRLREIFDEAEKNAPSIVFIDEIDAIAPKREESTGEVEKRVVA
QLLTLMDGIKGRGKIVIIGATNRPDAVDQALRRPGRFDREIEIRPPDTKGRKDILQVHTR
NMPLVDEGPDKVDLDKIAELTNGYTGADLAALSKEAAIAALRRFMQEKKINFDTPQIPAD
VLKELKVTMNDFMEAMKSVQPTLLREVYVEVPTVHWSDIGGLDNVKQQLREAVEWPMRFP
QLFEKTGIRPPKGVLLFGPPGTGKTMLAKAVATESNANFIAVRGPEVLSKWVGESEKAIR
EVFKRARQTAPCVVFFDEIDAIAPSRERIHGDSGVTDRIVNQLLSEMDGIEALNRVIVIG
ATNRATLLDPALLRPGRFDRIIYVPPPDLKARIDILKVHLKSVPTSPDLNLEEIAKKLEG
YTGADIEALVRETVMLKLRNVYSGCVEKANSECKEEECKNKVVNECMNNVDVKVTTQDLE
EGMKIVTPSLTKADIQRYETMSKQLKQSVI
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccaacggtataaggttaagagtatctgaggctagacagagagatgtagggaag
aagataggtagacttacatttaacatcatgaataagttgggcgtagattctggagattat
gtggaggttgtcggtccttcaggttcctccatagtccaggccatgcctacctatgacgtg
tctgactccgagattaagatagacggttacgttagaaaggctataggtgtttccatagga
gatgaagtcactgttaagaaagctagtgtgtctccagccaataaggtagtacttgcacca
actcagccaattagattcgatcaatccttcgttaattatgtaaaagagttgcttacagat
aagccactttcgaagggcgaaacaataccaattcccatatatacggggtctctcgattta
gttgtaattaatacaacgccttccaacagcgtatatgtcactagtaacactgcgatagag
ataagggaagaacctgtaaaggagcaggcaagcttcccaaaggtaacatgggaggatata
ggtgacctagaagacgtaaagtccaagattagagaaatagttgaattaccgatgaagcac
ccagaggtgtttcagcacctcggtatagagccaccaaagggagttctcttgtatggacct
ccaggcgttggaaagaccctgcttgctagggcattggcaaatgagataggtgcgtatttt
acttcaataaatggaccagagatcatgagcaagttctacggcgaaagcgagcaaagactt
agagaaatattcgatgaagctgagaaaaacgctccgtcaatagtgttcatagacgaaata
gatgcaatagcacccaagagggaggaatctacaggagaagtagaaaagagggtagtagcg
cagctactcactttaatggacggtataaagggtagaggtaaaattgttataatcggagct
actaacagacccgacgcggtggatcaagccttaagaaggcctggcagatttgacagggaa
atcgaaattaggccgcctgacactaaaggaaggaaggatatacttcaggttcacacaagg
aatatgcctctagtagacgaaggaccagacaaggttgacttagataagatagccgagtta
actaacggctatacaggtgcagatctggcagctctttctaaggaagctgcgattgcagct
ttgaggagattcatgcaggaaaagaagattaactttgacactcctcaaatacctgcagat
gtattaaaagagctgaaggttaccatgaacgactttatggaagccatgaagtcggttcag
cctacactcctcagggaagtttatgttgaagttccaacagttcactggtcagacatagga
ggtttagataacgtcaaacagcagttgagagaagctgtggagtggccaatgaggttccct
cagctgttcgagaaaaccggaataagaccgcctaaaggagttctcttgttcggtcctcct
ggtactggaaagaccatgcttgctaaggcagtagctactgagagcaacgcaaacttcata
gccgtaagaggtcctgaagttctctctaagtgggtaggagagagcgaaaaggcaataaga
gaagtattcaagagagcgagacaaactgcaccttgtgtagtcttcttcgatgaaatagat
gcaatagctccgtctagggaaagaatacatggagactctggagtaacagatagaatagtg
aatcaacttctctcagaaatggacggaatagaggctctaaacagagtaatagttatagga
gcaactaacagagctactttattggatccagctttacttagacctggaagattcgacagg
ataatttacgtcccaccaccagacctcaaagcaaggattgacatacttaaggtacacctt
aagtcggttccaacgagcccagatctgaacttggaggagatagcgaagaagttagaagga
tacaccggagctgacatagaggctctagttagagaaacggtaatgctcaagctaaggaac
gtatattcaggatgcgtagaaaaggcaaacagcgaatgcaaggaggaagaatgtaagaat
aaggtagtgaacgaatgcatgaacaacgtagacgtgaaagttacgacccaagatttggag
gaaggaatgaagatagtcacaccaagcttaacaaaagctgacatacagagatacgaaacc
atgtcaaagcagttgaaacaaagcgtgatataa
DBGET
integrated database retrieval system
