Sulfuracidifex metallicus: RQ359_002341
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Entry
RQ359_002341 CDS
T09529
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
smet
Sulfuracidifex metallicus
Pathway
smet04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
smet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
RQ359_002341
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smet03019
]
RQ359_002341
03009 Ribosome biogenesis [BR:
smet03009
]
RQ359_002341
04131 Membrane trafficking [BR:
smet04131
]
RQ359_002341
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smet04147
]
RQ359_002341
Messenger RNA biogenesis [BR:
smet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
RQ359_002341
Ribosome biogenesis [BR:
smet03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
RQ359_002341
Membrane trafficking [BR:
smet04131
]
SNARE
SNARE associated proteins
Others
RQ359_002341
Autophagy
Aggrephagy
Other aggrephagy associated proteins
RQ359_002341
Exosome [BR:
smet04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
RQ359_002341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_22
TIP49
AAA_5
AAA_2
AAA_33
AAA_14
IstB_IS21
AAA_28
nSTAND3
Mg_chelatase
RNA_helicase
AAA_18
ATPase_2
AAA_24
ABC_tran
Parvo_NS1
AAA_3
NPHP3_N
DUF815
AAA_17
Sigma54_activat
Vps4_C
AAA_7
NACHT
TsaE
AAA_lid_PRS2_C
ATP-synt_ab
ATPase
NB-ARC
AAA_25
Bac_DnaA
PhoH
SPT16
UFD1_N2
Motif
Other DBs
NCBI-ProteinID:
WOE50769
LinkDB
All DBs
Position
2156985..2159279
Genome browser
AA seq
764 aa
AA seq
DB search
MSASEEQRPPRRELVLKVVEARQKDVGRGKVRIDIELLSQIDVQPGDVVEIEGTRKTAAI
AWHLSQDDITGERDIIRMDGITRKNSGVSIGDKVVVRKAFVKQASMVKLAPSNFSISVDP
GFVSYVKKRLKEFPLVEGDTVLIPVLGQAIPFTVVQVKPAGIVIVNDETIINISDKPVEQ
TKYPRVTYEDIGGLRDIIEKVRELVELPLRHPELFKRLGIEPPKGILLYGPPGVGKTLLA
KAIANETDAYFTSINGPEIMSKFYGESEQRLREIFEDAKKHAPAIIFVDEIDAIAPKRDE
VIGEVERRVVAQLLTLMDGLENRGNVIVIAATNRPNAVDPALRRPGRFDREIEIPLPDKT
GRMEIFQIHTRNMPLADDVSLEKLSDMTHGYTGADLASLVREAAMYALRRYLPKIDLNQD
KIPAEVLDSMRVTMDDFMKAFKEIVPSGLREIYIEIPEVKWTDVGGHEELKDELREVVEY
PLKYPEVYEKAGIDPAKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGES
EKAIREIFRKARMYAPAVIFFDEIDALAPMRGASYDSGVTERLVNQLLAEMDGVEKLENV
IIIAATNRPDILDPALLRPGRFEKLLYVPPPDVTSRKDILKVHTRGIPLSADTDLEEIAN
RTEGYTGADIAALVREAAMRAVRESMRVCIDAATEKCGQNQDCKDKEVKECMKNKVEVRP
KHFAEAMVKIKPSVTQDMIQFYQNWLEKARQQLPKAIVKPSTFT
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgccagcgaagagcaaaggcccccaaggagggagctagttctcaaagttgtagaa
gctagacaaaaggacgttggaagaggaaaagtaagaatagatattgaattactttctcaa
attgacgttcaaccaggtgacgtagttgaaatcgagggaacaagaaaaactgcggccata
gcatggcatctaagccaagatgacataaccggagaaagagatataataagaatggatgga
attactagaaagaattctggtgtttctataggagacaaggtagtagtaaggaaagctttc
gtaaagcaggcatctatggtaaaactagctccctctaatttctctataagtgtagatcct
ggtttcgtaagttacgtaaagaagaggcttaaagagttccccctagtggaaggagatacg
gtccttatacccgtgctaggtcaagctattccatttaccgtagtacaagttaaacctgca
ggaatagtaattgtgaacgacgaaacaataataaatatatctgacaagccagtagaacaa
accaagtatcctcgtgtaacatatgaagatataggaggactaagagacataatagaaaag
gtgagggaactagtagagctccctctaagacatcctgagctttttaagagattaggaatt
gagcctccaaagggtatattgctttacggtccgccaggagtcggaaaaacgttactagca
aaagccatagctaacgaaacagatgcctatttcacatccataaatggacctgagattatg
agcaaattctatggagaaagcgagcaaagacttagagaaatatttgaggatgcaaagaag
cacgctccagcaataatattcgtggacgaaatagatgcaatagctcctaagagagacgaa
gttataggagaagtcgaaaggagagttgtagctcagctattaacattaatggacgggctt
gaaaacagaggaaacgtaatagttattgcggcaactaatagaccaaacgcggtagatcca
gctttaagaaggcctgggagattcgatcgtgaaatcgagattcctctacctgataagaca
ggcaggatggagatattccaaattcacactagaaacatgcctcttgccgatgatgtaagc
ttagaaaagcttagcgatatgacccatggatatacgggtgcggatcttgcatctttagtt
agagaagctgcaatgtatgctctaagaagatatttaccaaagatagatctaaatcaggat
aagatacctgcagaagtacttgattctatgagggttacaatggacgattttatgaaggca
ttcaaagagatagttccaagcggactaagagaaatatacatagaaataccagaagttaag
tggacagacgtaggaggtcatgaagagctgaaggacgaactaagggaagtagtagaatat
cctctaaaatacccagaagtatacgaaaaggctggaattgacccagctaagggtatacta
ttatttgggcctccaggaactggaaagacgatgttagctaaagctgtagctactgaaagc
ggagctaatttcattgctgtaagaggaccagaggtattatctaaatgggtaggagagagc
gaaaaggcaattagggaaatatttaggaaagctaggatgtatgctcccgcagtgatattc
ttcgatgaaatagatgctctagctcctatgagaggagcgtcgtacgatagcggagtaaca
gaaaggttagtaaaccagcttttggccgagatggacggagtagaaaagttagaaaacgta
ataataattgcggcaactaatagaccagacatactagatcctgcactattaagaccaggt
aggtttgagaaattactatatgtacctccaccagatgtaacatcgagaaaagacatatta
aaggtgcatactagaggcatccctcttagtgctgatacggacctagaagaaatagctaac
agaacagaaggatatactggagctgacattgcagctctagtcagggaagctgcaatgaga
gcagttagagaatctatgagagtatgtatagatgcagctacagagaagtgcggacagaac
caagactgcaaagacaaagaagtcaaggaatgcatgaagaataaggttgaagtaagacct
aaacactttgcagaggctatggtgaagataaaaccatctgtgacacaagatatgatacaa
ttctatcagaactggctagagaaagcaagacagcagctacctaaggctatagtaaagcca
agtaccttcacgtga
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