Streptobacillus moniliformis: Smon_0711
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Entry
Smon_0711 CDS
T01125
Name
(GenBank) VacB and RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
smf
Streptobacillus moniliformis
Pathway
smf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Smon_0711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smf03019
]
Smon_0711
03016 Transfer RNA biogenesis [BR:
smf03016
]
Smon_0711
Enzymes [BR:
smf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Smon_0711
Messenger RNA biogenesis [BR:
smf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Smon_0711
Transfer RNA biogenesis [BR:
smf03016
]
Prokaryotic type
tRNA degradation factors
Smon_0711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
OB_RNB
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ACZ01184
UniProt:
D1AY08
LinkDB
All DBs
Position
complement(804173..806032)
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AA seq
619 aa
AA seq
DB search
MNKIFESKFICKNKRIAFAYTDNNEKVLIRDINFNNAFDGDTVIVEIIDNERLIGKVNKI
VKRQDSPYFGNVILCKRNKYIIRLNRSDLIVTTTTKKINIKHGDILSFNIDYTTLNKDDI
KVNILNNFGNINNSDNILNSLLDASNISKGFLNEIKKEVVEIRRPNVSEELKYRVDLRHQ
KTITIDDISAKDLDDAIYLEKEENHYILYVSIADVSYFVKEYSKLDFEAAKRGNSIYLAE
QVIPMLPKKLSNNLCSLNPDEDKLTFTVKLKYDLNGKLIESDFFKSIIKSHHRLNYTDVN
KMFDNNDKSYPILWDMLELSKLLRKQKNKKGMINFNIPEIKLILDENGDIKEISKRISGL
SQELIENFMVAANEAVAEYLHWQNIPAIYRVHEAPEIDTLRSLNKKLNILGYNINNVMDI
HPGKIAKIIDKSSNDENSYLIHKTVLQAMKRAKYMNENKGHFGLALDNYLHFTSPIRRYS
DLIVHRMLQFTLNNKKISTKYIDKKKEEYKLIAEHISKTERVAERLEKDSIKLKLLDYMK
KHLNEVFEARISGIIRGKIFLQLDNLIETVFYDNISSKYIIDDALLIDNKGNKFNIGDKV
KIKIIKLDYERIEIISEVL
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaatttttgaaagtaaatttatatgtaaaaacaaaagaattgcttttgcatat
actgataataatgagaaagtattaattagagatataaattttaataatgctttcgatgga
gatactgtaatagttgaaataatagataatgaaagacttataggtaaagtcaacaaaata
gttaaaaggcaagatagcccatattttggaaatgttatactatgtaaaagaaataaatac
attattagattaaatcgaagtgatttaatagttactactactacaaaaaaaatcaatatt
aaacacggagatatattaagttttaacattgattatacaacattaaataaagatgacatt
aaagttaatattcttaataattttggtaatataaataattctgacaatatattaaactct
ttattagatgcttcaaatatatctaagggatttttaaatgaaataaaaaaagaggttgta
gaaattagaagacctaatgtatctgaagaattaaaatatagggttgatttacgtcatcaa
aaaacaattacaattgatgatataagtgcaaaagatttagatgacgctatttaccttgaa
aaagaagaaaatcactacatattatatgtaagtatagcagatgtttcatatttcgttaaa
gaatactctaaacttgattttgaagctgctaaaagaggtaatagtatttatttggctgag
caggttatacccatgttgcctaaaaagctttctaataacttatgctctttaaatccagat
gaagataaattaacttttacagtaaaacttaaatatgatctaaatggtaaattgattgaa
agtgatttctttaaatctattattaaatcacatcatagattaaattatactgatgttaat
aaaatgtttgataacaatgataagagctaccctattttatgggatatgttagaactttct
aaattattaagaaaacaaaaaaataaaaaaggtatgattaatttcaatattcctgaaata
aaattaatacttgatgaaaatggcgatataaaggaaatatcaaaaagaatatcaggatta
tctcaagaattaattgaaaatttcatggttgctgctaatgaggctgttgctgaatatcta
cattggcaaaatattcctgctatttatagggtgcatgaagctcctgaaattgatacatta
agaagtttaaataaaaaacttaatatattgggatataacataaataatgtaatggatata
catccaggtaaaatagctaaaataatagataaaagctctaatgatgaaaattcatattta
attcataaaactgtattacaagctatgaaaagagctaaatatatgaatgaaaataagggg
cattttggtttagcattagataattatctccactttacatcaccaataagaagatattct
gatttaattgttcatagaatgcttcaatttacattaaataataaaaaaatctccactaaa
tatattgataagaaaaaagaggaatataaattaatagcagagcatatatctaaaacagaa
agagttgctgaaagacttgaaaaagactctataaaattaaaattattagactatatgaaa
aaacatttaaatgaagtatttgaagcaagaatatctggtattattagaggtaaaatattt
cttcaattagataatttaattgaaaccgttttttatgataatattagttctaaatatatt
atagatgatgctttattaattgataataaaggaaataaatttaatattggtgataaggta
aaaataaaaatcataaaattagattatgaaagaatagaaattatttcggaggtactataa
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