Candidatus Karelsulcia muelleri GWSS: SMGWSS_012
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Entry
SMGWSS_012 CDS
T00630
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smg
Candidatus Karelsulcia muelleri GWSS
Pathway
smg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMGWSS_012 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smg03021
]
SMGWSS_012 (rho)
03019 Messenger RNA biogenesis [BR:
smg03019
]
SMGWSS_012 (rho)
Transcription machinery [BR:
smg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMGWSS_012 (rho)
Messenger RNA biogenesis [BR:
smg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMGWSS_012 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA
ATPase_2
AAA_22
AAA_25
Mor
AAA_14
NACHT
AAA_24
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ABS30444
UniProt:
A8Z6C1
LinkDB
All DBs
Position
complement(16020..17183)
Genome browser
AA seq
387 aa
AA seq
DB search
MNNLRYKNFSIKKNISEYKFEGLVISEGVLEIMPEHYGFLRFYYYNYLSSYDDVYVSRSQ
IRLFGMKTGDTIRGEVRTPKNGEKYFTLIKIFQINGRFPSSIIFRKSFEHLTPLFPNEKF
NISEKKVTISTRIVDLFSPIGKGQRGIIVAPPKTGKTTLLKEIANTISYNHPEVYLIILL
IDERPEEVTDMQRNVNGEVVSSTFDEPAEKHVKVANIVLQKAKRMVECGHDVVILLDSIT
RLARAYNTVSPTSGKVLSGGVDSNALHKPKRFFGAARNIEYGGSLSIIATAIIETGSKMD
EVIFEEFKGTGNMELQLDRKIANKRIYPAIDLVASSTRKEELLLNDNTLKTIFFLRKRLS
EMTTVEAIEYIIFRLNKTKNNKEFILM
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaataacctaagatataaaaatttttcaataaaaaaaaatataagtgaatataaattt
gaaggactagtaattagtgaaggagtattagaaataatgcctgaacattatggattctta
agattttattattataattatttatcatcatatgatgatgtttacgtatcacgatctcaa
ataagactttttggaatgaaaactggtgatactataagaggagaagttcgtactcctaaa
aacggagaaaaatattttactttaataaaaatattccaaataaatggacgttttccttct
tctataatttttagaaagtcttttgaacatttaactccattatttcctaatgaaaaattc
aatatttcagaaaaaaaagtaactatttctacaagaattgtagatttattttctcctata
ggaaaaggacaaagaggaattatagtagcacctcctaaaactggaaaaacaactttatta
aaagaaatagcaaatacaatatcttataatcatccagaagtatatttaataattctttta
atagatgaaagaccagaagaagttacagatatgcaaagaaacgtaaatggggaagtagta
tcttcaacttttgatgaaccagcagaaaaacatgtaaaagttgctaatattgttttacaa
aaagcaaaaagaatggttgaatgtgggcatgatgtagttattttactagattctataaca
cgtttagctagagcatataatactgtttctcctacatctggaaaagttttatcaggagga
gttgattctaacgcattacataaacctaaaagattttttggggctgctagaaatattgaa
tatggtgggtctctttctataattgctacagcaattatagaaactggatcaaaaatggat
gaagtaatatttgaagaatttaaaggtacaggtaatatggaactacaattagatagaaaa
attgcgaataaaagaatatatccagctatagacttagttgcttctagcacaagaaaagag
gaattattattaaatgataacacattaaaaacaattttttttctcagaaaacgtctttct
gagatgactactgtagaggctattgaatatataatatttcgtttaaataaaacaaaaaat
aataaagaatttatattaatgtaa
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