Sinorhizobium meliloti Rm41: BN406_01016
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Entry
BN406_01016 CDS
T02332
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smi
Sinorhizobium meliloti Rm41
Pathway
smi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN406_01016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smi03019
]
BN406_01016
Messenger RNA biogenesis [BR:
smi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN406_01016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
CCM67061
LinkDB
All DBs
Position
1037361..1039028
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AA seq
555 aa
AA seq
DB search
MAQDEELVFLPLGGVGEIGMNLGLYGYGRPGHRQWIMVDCGVTFPGPELPGVDLVLPDIA
FLAEQRRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAFEKSRSEIP
ITIFKQGDRINVGPFSVEAVGVNHSIPEPMALVIRTQLGTVVHTGDWKIDLEPSLGPLTD
ESRFRQIGEEGVLALVCDSTNALREGVSPSERQVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVDVAREVGLMEGVKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIITD
SEALVHVSGHPRRTELQQMYQWVKPQILVPVHGEAAHLTAHAELGLQSGIPSVPRLRNGE
MLRLAPGPAEVIDEAPHGRIYKDGTLIGDFEEMGIGERRKLSFAGHVSVSVVLDSRYDFL
GDPDVVPIGLPEFDDEGEAMEDTLYDAVLGAVESIPRAKRKDLAMLQEAVRRAVRSTTNQ
VWGKKPVVTVFITKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaagatgaagaactggtgttcttgccgctcggcggcgtcggcgaaataggcatg
aatctcggcctttacggctatggaaggccaggtcaccgccaatggatcatggtcgattgc
ggcgttaccttccccggcccggaattgcccggcgtagatctggttctgcccgatatcgcc
tttctggccgaacagcgccgcaacctcaaggcgatcatcatcacgcatgcgcatgaggac
cattacggggccctgaacgacctgtggccgggcctgaacgttcccgtctacgcctcgccc
tttaccgcgggcatgctggaggccaagcgtgcattcgaaaaatcccgcagcgagatcccg
atcacgatcttcaagcagggcgaccgcatcaatgtcggacctttcagcgtcgaagccgtg
ggggtcaatcattcgatccccgagccgatggcactcgtcatccgcacgcaactcggcacc
gtcgtgcacacgggcgactggaagatcgatctcgagccttcgctggggcctctgaccgac
gagtcgcggtttcgccagatcggggaggaaggcgtcctcgcgctcgtctgcgattcgacc
aatgccttgcgcgaaggcgtgtcgccgtccgagcggcaagtctccgaaagtctcgccaag
atcattgccgatgccgagggccgcgtcgggatcaccaccttctcctccaatgtcgggcgc
atccgctctgttgcggaagcggcggaggctgcggggcgggaggtgcttctactcggcagt
tcgatgaagcgcgtcgtcgacgttgcgcgcgaagtcgggctcatggaaggcgtgaagccg
ttcctcgcagaggacgagttcggctacatcccgcgcgacaaggtcgtcgtcatcctgacg
ggcagccagggcgagccgcgcgcggcccttgccaagatcgctcgcgacgagatgcgcaac
gtggcgttttcggccggcgacacgatcgtattttcgtcgcgcaccatccccggcaacgaa
aaagcgatcaacgacatcaagaacgggcttatcgagcaaggcatccacatcatcacggat
agcgaggcgctggtgcatgtttccggccatccgcggcgcaccgagctccagcagatgtac
caatgggtgaagccgcagatcctcgtgccggtgcatggcgaggcggcgcatctgacggca
catgcggagctcgggctgcaatcgggcatcccgagcgtgccgcggctgcgcaatggcgaa
atgctacggcttgcgccgggccccgcggaagtcatcgacgaggcgccgcacggccgcatc
tacaaggacggcaccctcatcggcgatttcgaagagatggggatcggtgaacgccgcaag
ctgtcctttgccggccacgtctccgtcagtgtcgtactcgacagccgctacgactttctg
ggtgacccggacgtcgtgccgatcggccttccggaattcgacgacgaaggcgaggcgatg
gaggacacgctctatgatgcggtgctcggcgccgtggaaagcatcccgcgggcaaagcgg
aaggacctcgcgatgctgcaggaagccgttcgccgcgccgtgcgcagcaccacgaaccag
gtctggggcaagaagccggtcgtgacggtttttatcacgaaggtctga
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