Sinorhizobium meliloti Rm41: BN406_03019
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Entry
BN406_03019 CDS
T02332
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
smi
Sinorhizobium meliloti Rm41
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
smi03016
]
BN406_03019 (ligT)
Enzymes [BR:
smi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BN406_03019 (ligT)
Transfer RNA biogenesis [BR:
smi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BN406_03019 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
CCM69064
LinkDB
All DBs
Position
complement(3136411..3136998)
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AA seq
195 aa
AA seq
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MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDVDWRTADEIIDRLDR
IERPEFQLQLSGTGAFGSKKPHSVWAGVSIAPEMFALQAEIERICQRIGLPSDPRKFTPH
VTLARLRSSRVEDVVEYLSGRGNFVTAPFTVSRFVLLSSRDSVGGGPYLTEEVFPLHEER
SNLASNEEHPASSVW
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atgccgagactgttcaccgccctcgaaattccgcgcaatgcagcaatgagtctttccttg
ctgcgcggaggtcttcccggagctcgctggatcgatgtggagaattatcacatcacgctc
cgcttcatcggcgacgtcgactggcgaaccgccgacgagatcatcgacagacttgaccgc
atcgaacggcccgagtttcagctgcagctgtcgggcaccggcgccttcggctccaagaaa
ccgcattccgtctgggccggcgtcagcatcgctcccgaaatgttcgccctgcaggccgaa
atcgagcgcatctgccagcgcatagggctgccctcggatccgcgcaagttcaccccgcat
gtgacgctggcgcgcctgcgctcctcgcgcgtcgaggatgtcgtcgaatatctctccggg
cgcggcaatttcgtcaccgctcccttcaccgtctcccgtttcgtgctcctgtcgtcacgc
gactcggtcggcggcggcccgtatctcacggaagaggtcttcccgcttcacgaagagcgc
tcgaacctcgcgagcaacgaggagcatcctgcttcgagcgtctggtaa
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