Sinorhizobium meliloti Rm41: BN406_03168
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Entry
BN406_03168 CDS
T02332
Name
(GenBank) ATP-dependent nuclease/helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
smi
Sinorhizobium meliloti Rm41
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smi03400
]
BN406_03168
Enzymes [BR:
smi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BN406_03168
DNA repair and recombination proteins [BR:
smi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
BN406_03168
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
NPHP3_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
CCM69213
LinkDB
All DBs
Position
complement(3317657..3321226)
Genome browser
AA seq
1189 aa
AA seq
DB search
MRSDATGPEERSPEGWLDWTTQRQALASDPARSAWVSANAGSGKTHVLTQRVIRLLLAGC
RPSAILCLTYTKAAASEMSNRVFEKLAEWATLDDTTLEKRIEAIEGKRPPTAKIQEARRL
FARALETPGGLKIQTIHAFCEALLHQFPLEANVAGHFSVLDDRAAAVLLADARRALLTAT
AAASDGELAEAFATVLDLADDTGLEKLLAAIVANRAPIQAFLDHASGRGSMEAHLRAALG
LEPGETAGTVMAAVWPLAGLNGPALDDYIDLGLRLGGAKPSAIADGLRAVRAIEDAATRY
AKLVELFFNGGGKPKAESAFLNAAMRRAAPQLELRVEEARSHMLACVDRLSIVQMYGATR
AALILAERLNRDYEALKKARSQLDFEDLINRTAALLARSDVGAWVHYKLDQGIDHILVDE
AQDTSPAQWTIIQSLAADFFAGETARADDRTIFAVGDEKQSIYSFQGARPERFSRESTLT
ERRVRAGNKHFSPIRLQLSFRSTVDVLSAVDTVFANSGNARGLSARSEAIVHASNRIGQP
GAVDLWDVIAPEPAASEEDWTAPFDATPERAPVNILARRIAAVLEDWIGRETVIEKGVRR
AMRPGDVIVLVRKRDAFVNALTRALKRRGNIPVAGADRLVLTSHIAVQDLIALGRFVLLP
EDDLSLAALLKSPLLDLGEEDVFELAARRTEGESLWRRLRQAGAEETSRYHEAVRTLSRY
SGLARELLPHDFYARVLGADGGRRAFLARLGSEVSDILDEFLTFALDHERNGLPGLQAFI
STLEIEAPTVKREQDKERDEVRVMTVHAAKGLEAPVVFLVDGGGEAFVRQQVSDLRFLEK
AQADHSTLTVPVWRAPGSAPNSLIAADNERLKKLAEEEYRRLLYVGMTRAADRLIVCGYR
GQRQNTDTWHSMVQGTLAQDLKGRGTPRLFRAGSEEWQGTAWREAHVPRDLPTSEGRSEE
SQRPTAGLPTALFTPPAAPRRLPRPLAPSGTTIAIDDPDAEAIVGSALFAGKSAPKFSML
RGAILHRLLQVLPSVDPRERLAAAERYLARSVPRWPEAERRALAGTVMDVLDHADLQPLF
GEHSRAEVSVMGTLKLGVRDFAVSGRIDRLAVTGDMVTIADYKTNREIPETPEEIAPVYR
NQLAIYRELLKPLYPGKRFRCVLIFTEGPAIRVLPEPMLDRSLEELATK
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaggagtgatgcgacaggcccggaggagagaagccccgaggggtggctcgactggacg
acgcaacggcaggcgctcgcctccgatcccgcgcgttccgcctgggtttccgccaatgcc
ggctccggcaagacgcatgtgctcacgcagcgcgtcatccggcttctgcttgcgggttgc
cggccgtccgccatcctctgcctgacctacacgaaggcggccgcctccgagatgtcgaac
cgcgtgttcgagaaactcgccgaatgggcgaccctcgacgataccacgctggaaaagcgc
atcgaggcgatcgaaggcaagcggccgcccacggccaagatccaggaggcccgccggctg
ttcgcgcgcgccctggaaaccccgggcgggctgaaaatccagacgattcatgccttctgc
gaggcgcttctgcaccagttcccgctcgaggccaatgtcgcagggcatttctccgttctc
gacgaccgcgcagcggcggtgctgctcgccgatgcccgcagggctctcttgaccgccacg
gcagcagcgagcgacggggaactggcggaggccttcgccacggtcctcgatcttgccgac
gataccgggcttgaaaaactgcttgcggcgatcgtcgccaaccgggcgccgatccaggcc
tttctcgaccacgcctccggacgcggcagtatggaagcgcatctgcgggcagcgctcggc
ctcgaacccggcgagaccgccgggacggtcatggccgcggtctggccgctggcggggcta
aatggcccggcactcgatgactatatcgaccttggattgcgcctcggcggcgcgaagccc
tctgccatcgcagacggcttgcgggccgtccgcgcgatcgaggacgccgccacccgctat
gccaaacttgtggaactcttcttcaacggcggcggcaagccgaaggcggaatcggccttt
ctgaacgccgccatgcgccgtgcagcgccgcagctcgaactcagggtcgaagaggcgcgc
agccatatgctcgcctgcgtggaccgcctgagcatcgtccagatgtacggggcgacccgc
gccgccctcattctcgccgagaggctcaaccgcgactacgaagcgctcaagaaggcacgc
agccagctcgatttcgaggatctcatcaaccgcacggcggcactgcttgcccgaagcgac
gtcggtgcctgggtgcactacaagctggatcaggggatcgaccatatcctcgtcgacgag
gcgcaggatacgagtcccgctcagtggacgataatccagtcgctcgcggcggatttcttt
gccggcgaaacggcgcgtgcggacgaccgcacgatcttcgccgtcggcgacgagaagcag
tcgatctattccttccagggagcccggccggagcgcttttcgcgtgagagcacgttgacg
gagcggcgggtgcgcgcgggcaacaagcacttcagccccatccgcctgcagctttccttc
cgctcgacggtggacgtgctctccgccgtcgatacggtctttgcaaattccgggaatgcg
agaggcctgagcgcccggagcgaggcgatcgtgcacgcctcgaacaggatcggccagccc
ggtgccgtcgacctctgggatgtgatcgcgcccgagccggcggcttcggaagaggattgg
accgctcctttcgacgcgacgcccgagcgcgcgccggtcaacatcctcgcccggcgcatt
gcagcggtcctcgaagattggatcggccgggagacggtgatcgaaaaaggcgtgcgccga
gcgatgcggcccggcgacgtcatcgtgctggtccgcaaacgcgacgccttcgtcaacgcc
ctgacgcgcgccctcaagcggcggggcaatatcccggtcgccggcgcggaccgcctggtt
ctgaccagccatatcgccgtgcaggacctgatcgcgctcggccggttcgtgcttctgccc
gaggacgacctgtcgctcgcggcactgctgaagagcccgctcctcgatcttggcgaggag
gatgtcttcgaactcgccgcccggcggaccgagggcgaaagtctctggcggcggctgcgg
caggcgggcgcggaggagacgagccgttatcatgaagcggtccgcacgctttcgcgctat
tccggcctggcgcgggaactgctgccgcacgatttctatgcccgtgtcctgggcgccgat
ggcggacggcgtgccttcctggcgcgcctcggcagcgaagtcagtgatattctcgacgaa
ttcctcaccttcgctctcgatcatgaaaggaacggtctgccgggcctgcaggctttcatc
tcgacgctggagatcgaagcgccgacggtcaagcgcgaacaggacaaggaacgcgacgag
gtccgcgtgatgaccgtacatgccgcaaagggcctcgaggcgccggtcgtcttcctggtc
gacggcggcggcgaggccttcgttcgccagcaggtctcggacctgcgcttcctggagaaa
gcgcaggccgatcattccacgctcacggtcccggtctggcgcgcgccgggctcggcgccg
aactcgctcatcgccgccgacaacgagcggctgaagaagctcgccgaggaggaataccgc
cggctcctctatgtcggcatgacgcgcgcagccgaccgcctgatcgtctgcggctatcgc
gggcagcgccagaacaccgacacctggcattcgatggtgcaggggacgctggcacaggac
ctcaaaggccgcggaacgccgaggcttttccgcgccggaagcgaggagtggcaggggaca
gcctggcgcgaagcgcatgtgccgcgcgacctcccgacatccgaaggccgctccgaagaa
tcgcaacggccgacagccggcctgccgacggcgcttttcacgcctccggccgcgccgcgg
cggctgccccggcctcttgccccgtccggaacgaccatcgcaatcgacgatcccgacgcc
gaagcgatcgtcggctcggccctcttcgccggcaagagcgcgccgaaattctcgatgctg
cggggcgcgatcctgcaccggttgctgcaggttcttccgtcggtcgacccccgcgaacgt
ctggccgcggcggagcgctatctcgcccgctccgtgccacgctggcccgaagccgaacgg
cgcgcactcgccgggaccgtgatggacgtgctcgaccatgcggatctgcaaccgcttttc
ggcgagcacagccgggcggaggtctccgtgatggggaccctgaagcttggggtccgcgat
ttcgccgtatcgggacggatcgaccgtctggccgtcaccggcgacatggtgacgatcgcc
gattacaagaccaaccgcgaaatccctgagacgcccgaagagatagcgccggtctacaga
aatcagcttgcgatctatcgcgaactcctgaaacctctttaccccggcaagcgtttccga
tgcgtgctgatcttcacggaagggcccgcgatccgggtgcttcccgagccgatgctggac
aggagtcttgaagagctcgcgacaaagtga
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