Sinorhizobium meliloti Rm41: BN406_05499
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Entry
BN406_05499 CDS
T02332
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
smi
Sinorhizobium meliloti Rm41
Pathway
smi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN406_05499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smi03019
]
BN406_05499
Enzymes [BR:
smi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN406_05499
Messenger RNA biogenesis [BR:
smi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN406_05499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
CCM71781
LinkDB
All DBs
Position
pSYMB:complement(431036..432550)
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AA seq
504 aa
AA seq
DB search
MSTFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPM
IEKLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTE
QLARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKN
RQTLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQT
LTANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRD
IEKLMGIQIAVASGEAPADQARPSKGRGGRGNGQPRGNAQPRGNGAGQRQGGPRRDRPQR
QAAAGGFAGDELLRDERSHERRDQRAVGHGPADGRPEGHRNHKAQKHHGRPGPQQAGRRG
SEQSGERNGGGNRPQRADGRGHQR
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
ttgtccactttcaaagagcttggcctctccgagcacatcgtggcgacactctccgccaat
ggtttcgaaaagccgacgcccatccaggctcaagccattccgctggtcctgaaagaccat
gacctcatcggtcttgcgcagacgggcaccggcaagaccgctgcgttcggcctgccgatg
atcgaaaagctcgtagccgatggcagacgtcccgatccgcgcaacattcgcgctctcgtg
ctcgcacctacccgtgaactggtgaaccagatcgcggccaacctgaagcttttcgtaaag
aagagcccgctcaagatcggcctcgtcgtcggtggcgtttcgatcaacaagcagaccgaa
cagctcgcccgtggcgtcgacattctcgtcgcgacccccggccgcctgctcgaccttgtt
tctcgcaaggcggtgacgctgacacaggctcgctacctcgttctcgacgaggctgaccag
atgctcgatctcggcttcatccacgacctgcgcaagatttccaagctggtgccgaagaat
cgtcagacgctgctcttctccgcaaccatgccgaagctgattgccgagcttgccggcgaa
tatctgaccgatccggtcaaggtcgaagtctcgcctccgggtaaggccgccgacaaggtc
gaacaatatgtgcatttcgtccccggcaaggacctgaagacgacgatcctgaagcagacg
ctgactgccaatcccgatgggctgtcgctgattttcagccgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccatgtcggcttcaaggccgcctcgatccatggcaacaag
agccagggccagcgggagcgcgcgctgaaggcattccgcgacggtgagatccgcgtgctc
gtggcgacggatgtggccgctcgcgggatcgacattccaggcgtcacccacgtctacaac
tacgacctgccggaagtgcccgacgcctatgtgcaccgtatcggccgcacggcccgtaac
ggccgcgacggcatcgcgatcgcattctgcgcgccggacgaaatccgcctgctgcgggac
atcgaaaagctgatgggcatccagatcgccgtcgccagcggcgaagcgcccgccgaccag
gcgcgcccctccaagggacgtggcggtcgcggcaacggtcagcctcgtggtaacgcccag
cctcgcggcaatggcgcagggcagcgccagggcggaccccgccgcgatcggccgcagcgc
caggcggcagccggcggattcgccggcgatgaactgctgcgcgacgagcgctcgcacgag
cgccgcgaccagcgtgctgtcgggcatggaccggcggacggacggccggaaggccaccgc
aatcacaaggcgcagaagcaccatgggcggcccggaccgcagcaggccggccgccgtggg
agcgaacagtcaggcgaacgcaacggcggcggcaatcgaccgcagcgtgccgacggtcgc
ggccatcagcgctag
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