Spiroplasma mirum ATCC 29335 SMCA: P344_00990
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Entry
P344_00990 CDS
T03382
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
smia
Spiroplasma mirum ATCC 29335 SMCA
Pathway
smia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P344_00990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smia03019
]
P344_00990
03016 Transfer RNA biogenesis [BR:
smia03016
]
P344_00990
Enzymes [BR:
smia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
P344_00990
Messenger RNA biogenesis [BR:
smia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
P344_00990
Transfer RNA biogenesis [BR:
smia03016
]
Prokaryotic type
tRNA degradation factors
P344_00990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
Thy1
SPATA25
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHI57571
UniProt:
W0GNJ6
LinkDB
All DBs
Position
158996..161101
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AA seq
701 aa
AA seq
DB search
MDKKVYETILNGRKLIVEYGQLAKQAAGSVLVRYGDTVVLVAVTVSDQASESDFFPLTVV
FQEKLYSVGKIPGGFLKREGKPSEYATLSARVIDRALRPLFSENFRNEVQVVINVLAVNN
DNDVRIAALFAASLAISISPIPFNGPIAGALVTIDNNGKIIINPTLDELNNGKMELIVAG
TRDAINMVEAGCQEISEDLVLAAILKGHDVVKELISFQDQIVQAVGKQKMQIELFSVRQE
IQDFVKANYQQALITSANIASKQERYHQIENINNAALMVYEEKQYKNEKEKKRVMLELNT
CLHNVVRDEVRRQITMDKKRLDGRKVDEIRSLTSEIDLLPVVHGSALFTRGETQVMTIVT
LGALGENQIIDGITDEEGKRFMHHYNFPPFSIGETRRMGSPSRREIGHGALGEKALAQII
PSEKVFPYTIRLVSEVLESNGSTSQASICASTLALMAAGVPISAPIAGIAMGLVMENDHY
TILTDIQGMEDHLGDMDFKVAGSEKGICALQMDIKITGISSEILQEALLAAKKARKVLLA
NMLATIATPRNHLAPTAPKMKTFMIPIDKIREVIGTGGKVISALIEKSDDVKIDIEDDGQ
VTIYHKNYESIEKAYQFIKDIVWPAAVGEEYEGKVVKIEKFGAFVNLKEGVDGLIHISKL
SDKHVGKTEKIVNLNDLVRVKVLEIDAKGKIKLGLVKIISK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaagtttatgaaacaattttaaacggtcggaaattaattgttgaatatgga
caattagcaaaacaagcagcaggtagtgttttagtaagatatggtgatacagttgtctta
gtagcggttactgtaagtgatcaggctagtgaaagcgatttttttccgttaacagttgtt
tttcaagagaaattatattcggtgggaaaaattcctggcggttttttaaaacgggaagga
aaaccaagtgaatatgcaactttatcagcgcgagttatagaccgtgcgttacgtccgtta
ttttctgaaaattttcgtaacgaagtccaagttgttattaatgttttggccgttaataat
gataatgatgtgcgaattgcggcgttatttgctgcttcgttagcaatttcaatttctcca
attccatttaatggtccaattgcgggcgccttagtaacaattgataataatggtaaaata
ataattaatcctactttagatgaattaaacaatggcaaaatggaactaattgtagcggga
actagggatgcaattaatatggttgaagcaggttgccaagagattagtgaagatttagtg
ttagcagccattttaaaaggtcacgatgttgtgaaagaattaatatcatttcaagaccaa
attgttcaagcagtaggtaaacaaaaaatgcaaattgaattatttagtgtccgtcaagaa
attcaagattttgtaaaggctaattatcaacaggctttaattacctctgcaaatattgca
agtaagcaagaacgttatcatcaaattgaaaatattaataatgctgcattaatggtatat
gaagaaaaacaatataaaaatgaaaaagaaaaaaaacgggtaatgttagaattaaacact
tgcttacataatgttgttcgtgatgaagttcgtcgtcagatcacaatggataaaaaacgc
ttggatggtcgaaaagttgatgaaattcgcagtttaacaagtgaaattgatttattaccc
gttgttcatggaagtgctttatttacacgtggtgaaacacaggtaatgacaattgtgaca
ttaggagcattaggagaaaaccaaattattgatggtattacagatgaagaaggaaaacgt
tttatgcaccattataactttccgccattttcaattggtgaaacaaggagaatgggatca
ccctctcgccgagaaattggccacggagccctgggggaaaaagccttagcgcaaattatt
cctagtgaaaaagtctttccttatacaattcggttagtttccgaagttctggaatcaaat
ggaagtacttcgcaagcatcaatttgtgcatcgacgttagcgttgatggcggctggtgta
ccaattagcgctccaattgctggaatcgctatgggcttagtaatggaaaatgatcactat
actattttaactgatattcaagggatggaagatcacttaggtgacatggattttaaagtt
gctggtagtgaaaaaggaatttgtgctttacaaatggatattaaaattacggggattagt
tcagaaattttacaagaagcattactggcggctaaaaaagctcggaaagtattgttagcc
aatatgttagcaacaattgccactccacgtaatcatttagcaccaacagctccgaaaatg
aaaacctttatgattcccattgacaaaattagagaagttattggaacggggggtaaagtt
attagtgccttaattgaaaaatctgatgatgttaaaattgatattgaagatgatgggcaa
gttacgatttatcataaaaattatgaatcaattgaaaaagcataccaatttattaaagac
attgtgtggccagcagctgttggtgaagaatacgaaggtaaagttgttaaaattgaaaaa
tttggtgcttttgttaacttgaaagaaggcgttgatggtttaatccatatttcaaaactt
tctgataaacatgttggcaaaacagaaaagattgttaatttaaatgatttagtacgggtg
aaagtattagaaattgatgccaaaggaaaaattaaactaggattagtaaagattattagc
aaataa
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