Streptomyces mirabilis: SMIR_19605
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Entry
SMIR_19605 CDS
T10322
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
smib Streptomyces mirabilis
Brite
KEGG Orthology (KO) [BR:
smib00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smib03019
]
SMIR_19605 (hrpA)
Enzymes [BR:
smib01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SMIR_19605 (hrpA)
Messenger RNA biogenesis [BR:
smib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SMIR_19605 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
nSTAND_NTPase5
T2SSE
NACHT
PhoH
AAA_25
SLFN-g3_helicase
MetJ
AAA_16
TsaE
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QUW81053
LinkDB
All DBs
Position
complement(4421148..4425128)
Genome browser
AA seq
1326 aa
AA seq
DB search
MSTHPAPVLGDLAPRLAELTLRDAHRLGRRLEGARRIRKPEARAAVLAEIDAEVTKAEAR
MAERRTRVPAVTYPEQLPVSQKKADIADAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELDTPLGEAVGWKVRFTDQVNPDGTFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGDDADRDQITAITDAVEELQAEGKGDILVFLS
GEREIRDTADALTKKQYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGNARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFD
TRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELNALDPS
EKDVRKRLTETGRKLAQLPVDPRLARMVLEADKNGCAREVMVIAAALSIQDPRERPADKQ
TQADQQHARFRDETSDFLAFLNLWRYVREQQKERGSSAFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNEDDAAEQSVHVSLLAGLLSHVGMKDVKETGGESGGRSTGKNEYLG
ARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNARIEPEWVEPLAEHLLKRTYSE
PHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDAETSRDLFIRNALVEGDWRTHHKFF
ADNRKLLTEVEELEHRARRRDILVDDETLFDFYDQRVPAHVVSGAHFDSWWKHKRHDEPE
LLDFERSMLINERAGDVSKDDYPDSWRQGRLKFRVTYQFEPGADADGVTVHIPLQVLNQV
TDEGFDWQIPGLREEVVTELIRSLPKPIRRNYVPAPNFAKRFLDQAVPLQEPLPTTLARE
LKRMVGVPVTADDFDWSRVPDHLKITFRIVDERRRKLAEDKDLETLQLQLKPKARKAISQ
AAAATAEREGGESLERTGLTDWTIGTLTPVFETRRAGQPVKAYPALVDDGPTANTVSVRL
FDTEAEQAQAMWKGTRRLILRNIPVNPGKFASDKLTNAQKLALSANPHGSVQALFDDCAT
AAADRLIGDFGGPAWDEESYRKLYDKVRAEIVDTTVRTVSQVQQVLAAWQACERRLKATS
SPTLLANLTDVRTQLNALVKPGFVTATGLRRLPDLMRYLVAADRRLQQMPTGVQRDTTRM
EKVHEMQDEYAWLLEQLPQGRPVPQQVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKA
IDAAVP
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcctgcccccgtcctcggcgacctcgccccccgcctggccgagctgacc
ctgcgcgacgcgcaccggctcggccgcaggctcgagggcgcgcgccggatccgcaagccc
gaagcccgcgccgccgtgctcgccgagatcgacgcggaggtcaccaaggccgaggcccgc
atggccgagcgccgcacccgtgtgcccgccgtcacctaccccgagcagctcccggtcagc
cagaagaaggccgacatcgccgacgccatacgcgaccaccaggtcgtcatcgtcgcaggt
gagaccggctccggaaagaccacccagatccccaagatctgtctcgaactgggccgcggc
gtccgcggcatgatcggccacacccagccccgccgcatcgccgcccgcacggtcgccgaa
cgcgtggcggaggagctggacacccccctcggcgaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacggcaccttcgtcaagctcatgacggacggcatcctgctc
gccgagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcc
cacgagcgctccctcaacatcgacttcctgctcggctacctcgcccagctgctccccaag
cgcccggatctcaaggtcgtcatcacctcggccacgatcgacccggagcgcttctcccgt
cacttcggcgacgccccgatcgtcgaggtcagcggccgtacgtaccccgtggaggtccgc
taccgcccgctcctcgaagaggacggcgacgacgccgaccgcgaccagatcaccgcgatc
acggacgcggtcgaggaactgcaggccgaaggcaagggcgacatcctcgtcttcctctcc
ggcgaacgcgagatccgcgacacggcggacgcactcaccaagaagcagtaccgcttcacc
gaggtcctccccctctacgcccgcctctcccacgcggagcagcaccgcgtcttccagccc
cacaccggccgcaggatcgttctggcgaccaacgtcgccgagacctcgctcaccgtcccg
ggcatcaagtacgtcatcgacccgggcaatgcccgtatctccagatacagccaccgcacc
aaggtccagcgcctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtcggacggcatctgcatccgtctgtactccgaggacgacttcgac
acccgcccggagttcacggacgcggagatcctccgtacgaacctggcgagcgtcatcctc
caaatgacggcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgagacggcgtccagctcctccaggaactgaacgcactcgacccgtcc
gaaaaggacgtacgcaagcgcctgacggagaccggccgcaagctcgcccagctccccgtc
gacccccggctggcccgcatggtcctggaggccgacaagaacggctgtgcgcgcgaggtc
atggtgatcgccgcggcgctctccatccaggacccgcgcgagcgccccgccgacaagcag
acgcaggcggaccagcagcacgcccgcttcagggacgagacgagcgacttcctcgccttc
ctcaacctctggcgttacgtccgcgaacaacagaaggagcgaggctcgtcggccttccgc
cgtatgtgcaagcaggagtacctgaacttcctgcgcatccgcgagtggcaggacatctac
acccagctgcgcacggtcgccaagcagatgggcatccacctcaacgaggacgacgcggca
gagcagagcgtccatgtctcccttctcgccggcctgctctcgcacgtcggcatgaaggac
gtgaaggagaccgggggcgagagcggcgggcgcagcacgggcaagaacgagtacctgggt
gcccgcaacgccaagttcgcgatcttccctggctcggccctcttcaagaagcccccgcgt
ttcgtgatgtcggccgagctggtggagacctcccgtctctgggcccgcgtgaacgccagg
atcgagcccgagtgggtcgaacccctggcggaacatctcctcaagcgcacctacagcgaa
ccgcactgggagaaggaccaggcggccgtgatggcgtacgagaaggtcaccctctacggc
gtcccgatcgtcgcccagcgcaaggtcaactacggtcgtatcgacgccgagacgagccgc
gacctcttcatccgcaacgccctcgtggagggcgactggcgcacgcaccacaagttcttc
gccgacaaccgcaagctcctgaccgaggtcgaggagctggagcaccgtgcccgccgccgg
gacatcctggtcgacgacgagacgctgttcgacttctacgaccagcgggtgccggcccac
gtcgtgtccggcgcgcacttcgactcgtggtggaagcacaagcgccatgacgagccggag
ctcctcgacttcgagcgctcgatgctcatcaacgagcgagccggtgacgtcagcaaggac
gactaccccgactcgtggcgtcagggccgcctgaagttccgggtgacctaccagttcgag
ccgggcgcggacgccgacggcgtcacggtccacatcccgctccaggtcctgaaccaggtg
acggacgagggcttcgactggcagatcccgggcctgcgcgaggaagtggtcaccgagctc
atccgctccctccccaagcccatccgccgcaactacgtccccgccccgaacttcgcgaag
cggttcctcgaccaggccgtgccccttcaggagccgctgccgacgaccctcgcccgcgag
ctcaagcggatggtcggtgtgccggtcactgccgacgacttcgactggtcccgcgtcccc
gaccatctgaagatcaccttccggatcgtcgacgagcggcgccgcaaactggccgaggac
aaggacctggagaccctccagctccagctgaagccgaaggcgcgcaaggcgatctcgcag
gccgcggcggcgacggcggagcgcgagggcggcgagtccctggaacgtacgggcctcacg
gactggacgatcggcacgctgacgcctgtcttcgagacgcgccgggccggccagcccgtg
aaggcgtacccggccctggtcgacgacggcccgacggcgaacaccgtctccgtacgtctc
ttcgacacggaggccgagcaggcgcaggccatgtggaagggcacccggcggctgatcctg
cgcaacatcccggtgaacccgggcaagttcgcctcggacaagctcaccaacgcccagaag
ctcgccctgtccgccaacccgcacggctccgtgcaggccctgttcgacgactgtgcgacg
gcggcggcggacaggctgatcggcgacttcgggggcccggcgtgggacgaggagtcgtac
cggaagctgtatgacaaggtgcgcgccgagatcgtcgacacgacggtccggacggtgagc
caggtgcagcaggtcctcgccgcctggcaggcctgtgagcgccgcctgaaggccaccagc
agccccaccctgctggcaaacctcacggacgtacggacgcagctgaacgccctggtgaag
cccggcttcgtcacggcgaccggcctgcgccgcctcccggatctgatgcgctatctggtc
gccgccgaccgccgcctgcagcagatgccgaccggcgtccagcgggacaccacccgcatg
gagaaggtccacgagatgcaggacgagtacgcgtggctcctggagcagctgccgcagggc
cggccggtcccgcagcaggtcctggacatccgctggatgatcgaggagctccgggtcagc
tatttcgcccacgcgctcggcacggcgtacccggtctccgacaagcgcatcgtgaaggcg
atcgacgcggcggtgccgtaa
DBGET
integrated database retrieval system
