Streptomyces mirabilis: SMIR_25455
Help
Entry
SMIR_25455 CDS
T10322
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
smib Streptomyces mirabilis
Pathway
smib03018
RNA degradation
Brite
Enzymes [BR:
smib01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SMIR_25455
Messenger RNA biogenesis [BR:
smib03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMIR_25455
Ribosome biogenesis [BR:
smib03009
]
Prokaryotic type
rRNA processing factors
SMIR_25455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QUW82034
LinkDB
All DBs
Position
5775168..5779211
Genome browser
AA seq
1347 aa
AA seq
DB search
MLEPTEPTEGSDNNNTPSDTLPPRRRRRAASRPAGPPTGAAESQSVAETTAPAIPPVASA
EAVAAAEAPEALETEETQETEETVEEAVAHAAAAEPAEDAAPRRTRRRATRRVSAPAGAP
GTAEAAPAAETTVVPATTPAEVEAQVEAAPAAEAAPAVEEEAAPAARPRRRATRRASAPT
GAPKAAETAQTPEAPEVAETPEPVEAQAEEAPAAEDAAPRRTTRRRATRRVSAPAGAPEG
DAADERVEAPVTSETSPSESKPAAEAETKPAAEAETTEDGAPRRTRRRATRKAAVGFSAP
APKEAESARRPARPAVAVFQAPVFTEPMFQTPERAAAAAAAEAAEVAAEAPAAEEVVEAP
VAVEEETGGRRRRRRRTVEEAPAAPAAEPVDEVEEPDESAEDVEDGVEDDESEEESAGSR
RRRRRGGRRRRRGESAEADGEAGDDEYAAEQAAQDAEDTAEQAEEDAEEADERDEPGGSG
SSSSRRRRRRRRRAGDSGPEAEPGENDPERTVVKVREPRGKKDEHPSDEVQSIKGSTRLE
AKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDNVLVEHYV
NKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIES
ALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKT
ILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKSGGSSNAPSLLYGEP
DMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVSHVAPDLADRLSKWTSEVDVFATYRID
EQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIV
RQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKR
VGQGLLESFSETCVHCNGRGVIVHMEQPTSVGGGGKRKKRGRGGAEQVHEHDHELEHTHE
IAEEPETVESEAEVAAEVAAPVALVEQEFQPDEELYSSAAEAEAAASRGGRSRRRATRRV
SAPAGAPKAEERAPRGRREERAERTERALTSREAAESEPVAVEDPVVEAPVVEAPEVTSA
PEAAPAPVVAVPEDEAAPKGRTRRRATRKVSAPAGSPKATEETVVTVTVTEPVAAPVPEA
AAEVVEPQPEAVAEAPTESAAPARPRRRAVRKATAPTASEEAAVVVVPSASAESAEAPEA
PETAPETAAESDVEAAAPAKKTAARKTAKKATAKKAATKKTAAKKTVAKKVTAKKATAKK
TAAKTTAKKTAAAEQQDRSTVSATTED
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagccgaccgaacccaccgagggttccgacaacaacaacactccgagcgacacc
ctgccgccgcggcgccgccgccgtgcggcgtcgcgtccggccggcccgcccacgggcgcg
gccgagtcccagtccgtggccgagaccacggctccggccataccgccggtggcatccgcc
gaggccgtggccgccgctgaggcccccgaggctctcgagaccgaagaaacccaagagacc
gaagagacggtggaggaggcggtggctcacgccgctgccgccgagccggccgaggacgcc
gctccgcgccgtacgcgtcgccgcgccacccgccgggtgtccgcgcccgccggtgcgccg
gggacggccgaggcggccccggccgcggagaccaccgtggtgcccgcgaccacgcccgcc
gaggtcgaggcccaggtcgaagcggcccctgccgctgaagcggcccccgccgtcgaggag
gaggcggcgcccgccgcccgtccgcgtcgtcgtgcgacccgtcgcgcctccgcgccgacc
ggtgcgcccaaggcggccgagaccgctcagacccccgaggctcctgaggtcgctgagacc
cctgagcccgtcgaggcccaggccgaagaggcccccgccgccgaggacgccgcaccccgc
cgcaccacccgtcgtcgcgccacccggcgcgtctccgcgcccgccggtgcgcccgagggc
gacgccgccgacgagcgtgtggaggcgcccgtgaccagcgagaccagccccagcgagagc
aagcccgccgccgaggccgagaccaagcccgcggccgaggccgagaccaccgaggacggc
gccccgcgccgcacccgccgccgtgccacgcgcaaggccgctgtcggtttctccgccccc
gcgccgaaggaggccgagtccgcgcgacggcccgcgcgtccggccgtcgccgtgttccag
gcgcccgtgttcaccgagccgatgttccagacgccggagcgggccgccgccgcggctgcc
gccgaggcggcggaagtggccgccgaggcccccgcggccgaagaggtcgtcgaggcaccc
gtggccgtcgaggaggagaccggcggtcgccgtcgccgtcgccgccggaccgtcgaggag
gcgcccgcggccccggccgcggagcccgtcgacgaggtggaggagcccgacgagtccgcc
gaggacgtcgaggacggcgtcgaggacgacgagtccgaggaggagtccgcgggctcgcgc
cgccgccgccgtcgtggtggccgtcgccgtcgccgtggcgagtccgccgaggcggacggt
gaggccggtgacgacgagtacgccgccgagcaggccgcgcaggacgccgaggacaccgcc
gagcaggccgaggaggacgccgaggaggcggacgagcgcgacgagccgggcggttccggc
tccagcagcagccgtcgccgccgtcgccgtcgccgtcgcgccggtgactccggccccgag
gccgagcccggcgagaacgaccccgagcgcacggtcgtcaaggtccgcgagccgcgcggc
aagaaggacgagcacccgtccgacgaggtgcagtccatcaagggctcgacccgcctcgaa
gccaagaagcagcgccgccgtgaagggcgcgagcagggccgccgtcgcgttccgatcatc
accgaggccgagttcctggcccgccgtgaggccgtcgagcgcgtgatggtcgtccgccag
agcggcgagcgcacccagatcggcgtcctcgaggacaacgtgctcgtcgagcactacgtc
aacaaggagcagtcgacctcgtacgtcggcaacgtctacctgggcaaggtccagaacgtg
ctgccttcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctctac
gccggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgcatcgagagc
gcgctgaagtccggccagtcggtcctcgtgcaggtcaccaaggacccgatcggccacaag
ggcgcccgtctcaccagccaggtctccctgcccggccgctacctggtctacgtgcccgag
ggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgcgcgcgcctgaagacc
atcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgagggc
gccagcgaggacgagctgcgccgcgacgtcgagcgcctgcaggcgcagtgggaggacatc
cagaagaaggcgaagagcggcgggagctcgaacgccccgtccctgctgtacggcgagccg
gacatgaccgtccgtgtcgtccgcgacatcttcaacgaggacttcaccaaggtcatcgtc
agcggcgacgaggcgtgggagaccatccacgggtacgtgtcccacgtcgcgcccgacctg
gccgaccgcctctcgaagtggacctccgaggtcgacgtcttcgcgacgtaccgcatcgac
gagcagctgatgaaggccctggaccgcaaggtctggctgcccagcggcggttcgctggtg
atcgacaagaccgaggccatggtcgtggtcgacgtcaacaccggcaagttcaccggtcag
ggcggcaacctcgaagagaccgtgaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctgcggctgcgcgacctgggcggcatcgtcgtcatcgacttcatcgacatggtc
ctggagtccaaccgggacctggtgctgcggcgcctcctggagtgcctgggacgcgaccgt
acgaagcaccaggtcgccgaggtcacctcgctgggcctggtccagatgacgcgcaagcgc
gtcggacagggccttctggagtccttctccgagacctgcgtccactgcaacggccgtggc
gtgatcgtgcacatggagcagccgacctcggtcggaggcggcggcaagcgcaagaagcgc
ggccgtggtggtgccgagcaggtccacgagcacgaccacgagctcgagcacacgcacgag
atcgcggaggagccggagacggtcgagagcgaggccgaggtggccgccgaggtcgccgcg
cccgtcgcactggtcgagcaggagttccagccggacgaggagctgtacagcagcgccgcc
gaggcggaggccgcggcttcccgtggcggtcgttcgcggcgccgggcgacccggcgcgtg
tcggcccccgcgggtgcgccgaaggccgaggagcgtgctccccggggccgccgtgaggag
cgggccgagcggaccgagcgggctctgacgtcccgcgaggccgccgagtccgagccggtc
gcggtcgaggacccggtcgtcgaggcgccggtcgtcgaggctcccgaggtcacgtcggct
cctgaggccgctccggcccccgtggtcgccgtaccggaggacgaggccgctcccaagggc
cgtacgcgtcgtcgtgccacccgcaaggtgtcggctccggccggttctccgaaggcgacg
gaagagaccgtggtgacggtgacggtcacggagccggtcgcggcgcccgtgcccgaggcc
gccgccgaggtcgtcgagccgcagcccgaagcggtcgccgaggcgcccaccgagagcgcc
gcgccggcccgcccgcgtcgccgcgccgtccgcaaggccaccgcgcccaccgcgtccgag
gaggcggccgtcgtggtcgtcccgtcggcctcggcggagtcggccgaggcccctgaggcg
cccgagacggcgcccgagactgcggccgagtccgacgtcgaggccgcggccccggccaag
aagacggccgcccgcaagacggccaagaaggcgacggcgaagaaggccgccaccaagaag
accgctgccaagaagacggtcgccaagaaggtcacggccaagaaggcgaccgcgaagaag
acggccgcgaagaccaccgcgaagaagaccgcggcggccgagcagcaggaccgttcgaca
gtctcggcgaccaccgaggactga
DBGET
integrated database retrieval system