Sphingosinicella microcystinivorans: SmB9_13270
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Entry
SmB9_13270 CDS
T05811
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
smic
Sphingosinicella microcystinivorans
Pathway
smic03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
smic00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SmB9_13270 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smic03021
]
SmB9_13270 (rpoA)
03400 DNA repair and recombination proteins [BR:
smic03400
]
SmB9_13270 (rpoA)
Enzymes [BR:
smic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SmB9_13270 (rpoA)
Transcription machinery [BR:
smic03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SmB9_13270 (rpoA)
DNA repair and recombination proteins [BR:
smic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SmB9_13270 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
TmoB
DUF6910
IDH
Motif
Other DBs
NCBI-ProteinID:
BBE33669
UniProt:
A0AAD1D5I9
LinkDB
All DBs
Position
1361339..1362385
Genome browser
AA seq
348 aa
AA seq
DB search
MAVIAKNWQELKKPNSLEVKAGADKARKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIDGVLHEFSSLAGVREDVTDIVLNVKQVAVKMLDEMPKRLHLTASGPGEVTAGQI
SVTGDIEIMNPDLVICTLDEGATLNMELTVETGKGYVPAAQNRPADAPIGLVPVDALYSP
VRQVAYKVENTRVGQELDYDKLTLNVETDGTVTPEDALAYSARILQDQLALFINFDEPTA
IAAVPSAAAAAQEDEGAINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLR
TPNFGRKSLNEIKEVLSQMGLRLGMEIPGWPPENIEELAKKLEQEIMG
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtaattgcaaagaactggcaggaactgaagaaacccaacagcctcgaagtgaag
gccggcgcggacaaggcgcggaaggcgactttcgtcgccgagccgctggagcgcggtttc
ggcctcacgctcggcaacgctctgcgccgcgtgctgctttcgtcgctgcagggtgccgcc
gtcacctcgatcaagatcgacggtgtgctgcatgagttctcctcgctcgccggcgtgcgc
gaggatgtcaccgacatcgtgctcaacgtgaagcaggtcgcggtgaagatgctcgacgag
atgccgaagcgcctgcacctcaccgcctctggtccgggtgaagtcaccgccggccagatc
tcggtgacgggcgatatcgagatcatgaaccccgatctcgtcatctgcacgctcgacgag
ggcgcgacgctcaacatggaactgacggtcgagaccggcaagggttacgtgcctgcggcg
cagaaccgcccggcggatgcgccgatcggcctcgttccggtcgatgcgctctactcgccc
gtgcgtcaggtcgcctacaaggtggaaaacacccgcgtcggccaggaactcgactacgac
aagctgacgctgaacgttgaaaccgacggcacggtgaccccggaagatgcgctcgcctac
tcggcgcgtatccttcaggaccagcttgcgctcttcatcaacttcgacgagccgaccgcg
atcgccgccgttccctccgctgctgctgcggcgcaggaagacgaaggcgccatcaaccgc
tacctcctcaagaaggtggacgagctggagctgtcggtccgcagcgcgaactgcctgaag
aacgacaacatcatctacatcggcgacctcgttcagaagactgaggccgagatgctccgc
acgccgaacttcggccgcaagagcctcaacgagatcaaggaagtcctctcgcagatgggc
ctccgcctcggcatggaaatccccggctggccgccggagaacatcgaggaactcgccaag
aagctcgaacaggaaatcatgggctaa
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