Sphingosinicella microcystinivorans: SmB9_19700
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Entry
SmB9_19700 CDS
T05811
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
smic
Sphingosinicella microcystinivorans
Pathway
smic03410
Base excision repair
smic03430
Mismatch repair
smic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SmB9_19700
03430 Mismatch repair
SmB9_19700
03440 Homologous recombination
SmB9_19700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smic03400
]
SmB9_19700
DNA repair and recombination proteins [BR:
smic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SmB9_19700
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SmB9_19700
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SmB9_19700
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
HVO_2718_N
Motif
Other DBs
NCBI-ProteinID:
BBE34312
UniProt:
A0AAD1D5Q7
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All DBs
Position
2058098..2059888
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AA seq
596 aa
AA seq
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MASIAVPTPDAFVFGVSRSVSGRQWRWRGGPPGDAADALRLGISDVTARLFTARGVRVED
IAALAQPTIRDLLPDPSIFRDMDTAASRMADAVTRGEAVVIFGDYDVDGATSAAVLIRFL
RAVGGTVSHYIPDRLLEGYGPSAEALVALKRAGAELVVCVDCGTQGFEALEAAKNAGLDV
IVVDHHKASTLLPPAVAIVNPNRIDEDEGAAFGHLAAVGMAFLVAVAVNRELRRRGWFAD
RPEPKLTELLDLVALGTVADVVPLTGLNRAYVSQGLKVMATRRNAGLAALATAARLERAP
RASDLGFALGPRINAGGRVGQADLGVRLLTGEGGELTALADELNRLNDERRAIEAMVTEA
AIAACERAGNAPIAVIAGDGWHPGVIGIAASRLKDRFGVPALVIGIDEAGTGKGSGRSIP
GVDLGAAVLAARDAGLISAGGGHAMAAGVTVARERVDDLARFLCERLEGDVARARAVDAL
SFDLALAPAGVTVSLAEALEAAGPYGAGWPGPRVAAGPVSVVKADIVGTGHVRVILAGAD
GARVKAVAFRSVDTPLGAALMQAGGRRLWVSGRVSQDDWGSTPRAELHLDDAAWAD
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
gtggcgagcatcgccgttccgacgcctgacgcctttgtcttcggcgtcagccgctcggtc
tccgggcggcagtggcgctggcggggcggcccgccgggtgatgccgccgacgcgctgagg
ctcggcatcagtgacgtgaccgcgcgcctgttcacggcgcgcggcgtgcgggttgaggac
atcgccgccctcgcgcagccgaccatccgcgatctgctgcccgacccttccatcttccgc
gacatggacacggctgcgtcgcgcatggcggacgcggtgacgcgcggtgaggccgtggtg
atcttcggcgactatgacgtcgacggggcgacgagcgctgccgtgctgatccgcttcctg
cgcgccgtcggcggcacggtttcgcattacatcccggaccggctgctcgaaggctacggc
ccctcggcggaggcgctggtggcgctgaagcgtgcgggcgcggagcttgtcgtgtgcgtc
gattgcggcacacagggcttcgaagcgctggaggcggcgaagaatgcggggctcgacgtg
atcgtcgtcgatcaccacaaggcttcgacactgctgccgcccgccgtcgccatcgtgaac
cccaaccgcatcgatgaagacgaaggtgccgcgttcgggcatctcgcggcggtcggcatg
gcattcctcgtcgccgtcgcggtgaaccgtgaactccgacggcggggctggttcgcggac
cgtcctgagccgaagctcaccgaactgctcgatctcgtcgcgcttggcacggtagcggac
gttgtgccgcttacgggcctcaaccgcgcttatgtctcgcaaggcctcaaggtgatggcg
acgcggcgcaacgcgggccttgccgcgcttgccaccgcagcgcggctggaacgcgcgccg
cgtgcgtccgacctcggcttcgcgctcggaccgcgcatcaatgccggtggccgcgtgggg
caggcggatctcggcgtgcggctgctgaccggggagggaggcgaactcactgccctcgcg
gatgagctcaaccggcttaacgacgaacgccgcgccatcgaggcgatggtgacggaagct
gcaatcgcggcgtgcgagcgcgcgggcaacgcgccgattgcggtgatcgcgggtgacggg
tggcatcccggagtcatcggcatcgctgccagccgcctcaaggaccgcttcggtgtgccc
gcgctcgtgatcggcatcgacgaggcgggcaccggcaaaggttcgggccgctcgatcccc
ggtgtcgatctcggcgcggcggtgctggcggcgcgcgacgcggggctcatcagcgcgggc
ggcggccacgccatggcggcgggtgtcacggtggcgcgcgagcgtgtcgacgacctcgcg
cgtttcctctgcgagcgactggaaggagatgtggcgcgcgcacgcgctgtcgatgcgctc
tccttcgacctcgcgctggcgccggcgggggttacggtgtcgctcgccgaggccctggaa
gccgcgggaccctatggagcaggttggccggggccccgggtcgcggctgggccggtttcg
gttgtgaaggccgacatcgtcggcaccggacacgtgagggtgattctggcgggcgccgac
ggcgcgcgcgtgaaagcggtggcattccgcagcgtcgatacaccgcttggcgcggcgctg
atgcaggccggcggacgcaggctctgggtgtcggggcgtgtcagccaggacgattggggc
tcgacgccgcgcgcggagctgcatctcgacgatgccgcgtgggccgactga
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