Sphingosinicella microcystinivorans: SmB9_25890
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Entry
SmB9_25890 CDS
T05811
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
smic
Sphingosinicella microcystinivorans
Pathway
smic03030
DNA replication
smic03430
Mismatch repair
smic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
smic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SmB9_25890
03430 Mismatch repair
SmB9_25890
03440 Homologous recombination
SmB9_25890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
smic03032
]
SmB9_25890
03400 DNA repair and recombination proteins [BR:
smic03400
]
SmB9_25890
Enzymes [BR:
smic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SmB9_25890
DNA replication proteins [BR:
smic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SmB9_25890
DNA repair and recombination proteins [BR:
smic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SmB9_25890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
HHH_3
COE1_HLH
DUF655
Motif
Other DBs
NCBI-ProteinID:
BBE34931
UniProt:
A0AAD1G1T6
LinkDB
All DBs
Position
2745514..2748957
Genome browser
AA seq
1147 aa
AA seq
DB search
MPESRFVHLRIQSPYSMLEGAVHAKDLAKACIKYGMPAAAVTDRNNLFAAMEFSDKLSDA
GVQPIIGALLSVARPGITQAGSKPAQDWLALLAQDDTGYKNLIRIISRAHLESDPVDGPN
VPLPEIEGLTDGLIALTAGPEGALARMFADGQADAAGAYADALQALFPDRLYIELSRTHN
PIEDSSEQALIALAHARNLPLVATNPVAFPDKSFAAAHDVLLCIADSAYVETEGRRRVSE
ECWLKPPGEMVRLFEDVPEAIDNTLVIARRCAVMAPSRKPILPSLAGDREGEATMLVEQA
RVGLARRLEGRADTEPYFERLDYELGIINKMGFAGYFLIVADFIQWAKSQGIPVGPGRGS
GAGSVVAWALTITDLDPMRLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQERYGR
DQVAQIITFGTLKARAVLKDVGRVLQMPYGQVDRLAKLVPNHPTDPWTLDRTMNGVAEFE
NETKRDPAVENLVNLAMKLEGLPRHASTHAAGVVIGDRPLDELVPLYRDPRSDMPVTQFD
MKWVEKAGLVKFDFLGLKTLSVLQRALDLLAKRGITVDLSTIPWDDPDVYALLAKGDTVG
VFQLESEGMRRTLAQVKPDCFEDIIALVSLYRPGPMDNIPSFANRKHGTEAVDCLHPKLE
PILKETYGVIIYQEQVMQIAQVLAGYSLGEADLLRRAMGKKKKEEMDAQKARFLEGATAQ
GVDHAQADYIFELVAKFAGYGFNKSHAAAYALVAYQTGWMKAKYPVEFYAASMAYDIALT
DKLSVFIDDMKRMGVECLPPCINNSEADFSVEDGKVRYALAGLKGVGERAMEGIVEVREA
GGTFKSLTDFAERIDPTLLNKRQIESLVSGGAFDCVESNRAKAHAMAEAVLAAANAAADA
RKTHQGALFGGAGGGASITLMAPGSVSEWSLGDTMAKERDAFGFYFAAHPLSAWQHVLDT
HGARSFARVCEDGPPWDGGRGSATMAGLVESVRWRTPQNGRSTRYLLASLSDSGGQYVAS
CFDEEVMPALEAAAAAQEVILINAELLWRDGEEAPRVTIRGLTAVAELSKHSRGRLTLKV
SPSFDAAALRRLADAQPVGRGDIFAEIELPDGFASIRVAHGLLLDSEMRHTAERIAGVTS
ASLVAVS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatcgcgttttgtccatctccgcatccagtcgccttattcgatgctggagggc
gcggttcacgcgaaggatctcgcaaaagcctgcatcaaatacggcatgcctgccgccgcc
gttaccgacagaaacaacctgttcgcggcgatggagttttcggacaagctctcggacgcg
ggcgtgcagccgatcatcggcgcgctgctctcggtcgctcggcccggcatcacccaagcc
ggaagcaagcccgcgcaggactggctggcgctgctcgctcaggatgacaccgggtacaag
aacctcatccgcattatctcgcgtgcccacctcgaatccgatccggtcgatgggccaaac
gtgccgctccccgagattgaagggctgacggacgggctcatagcgctcactgcggggccg
gaaggggcgctcgcgcggatgttcgcggatgggcaggcggatgccgctggtgcctatgcg
gacgcgctgcaggcgctgtttccagaccggctctatatagagctttcgcgcacgcataac
ccgatcgaggacagttccgagcaggcgctgattgcgctcgcgcacgcccggaatctaccg
ctggtcgccaccaatccggtggcattcccggacaagagcttcgcggccgcgcacgatgtg
ctgctctgcatcgcagacagcgcctatgtggaaaccgaaggccgccgccgcgtgtcagag
gaatgctggctgaaaccgccgggcgagatggtccggctgttcgaggatgtgccggaggcg
attgacaacacgctcgtcatcgcgcgccgctgcgcggtgatggcgccgtcgcgaaagccc
atcctgccgagccttgcgggcgaccgcgaaggcgaggcgacgatgctcgtcgagcaggcg
cgcgtggggctcgcccgtcggctcgaaggccgcgccgacaccgaaccctacttcgaacgg
ctcgattacgaactcggcatcatcaacaagatgggcttcgcgggctactttctgatcgtc
gcggacttcatccagtgggcgaagtctcaaggcatccccgtggggccggggcgcggttcg
ggtgcaggctccgtcgtcgcgtgggcgctcaccatcaccgatctcgatcccatgcggctt
ggcttgctgttcgagcgcttcctgaaccccgagcgcgtctcgatgccggacttcgacatc
gacttctgcgaaacccggcgcggcgaggtgatccgctacgtccaagaacgctacggccgc
gatcaggtggcgcagattatcacgttcggaacgctgaaggcgcgcgccgtgctgaaggat
gtcggccgcgtactgcagatgccctacgggcaggtggatcggctcgccaagctggtgccg
aaccacccgacggacccgtggacgctcgaccgcaccatgaacggcgtcgccgagttcgaa
aacgaaaccaagcgcgatccggcggtcgaaaacctcgtcaatctcgcgatgaagctcgag
ggcttgccgcgccacgcctcgacacacgcggcgggagtcgtgatcggcgaccgcccgctc
gacgagctagtgccgctctaccgagacccgcgttctgacatgcccgtcacccagttcgat
atgaagtgggttgaaaaagcgggcctcgtgaagttcgacttcctcggcctcaagacgctt
tcggtcctccagcgcgcgctcgatctgctcgccaagcgtggcatcaccgtcgacctgtct
acgatcccgtgggacgatcccgatgtctacgcactgctagcgaagggcgacacggttggt
gtgttccagctcgaatccgaaggcatgcgccgcacgctcgcgcaggtaaagccggactgc
ttcgaggatatcatcgcgctcgtctcgctctaccgtccgggcccgatggacaacattccg
agcttcgcgaaccgcaagcacggcaccgaggcggtcgactgcctgcatccgaagctggag
ccgatcctcaaggaaacctacggcgtcatcatctatcaggaacaggtgatgcagatcgcg
caggtgctcgcgggctattcgctcggcgaagccgatcttctgcgccgcgcgatgggcaag
aagaagaaggaggagatggacgcccagaaggcgcgtttcctcgaaggcgccaccgcgcag
ggcgtcgatcacgcccaggccgactacatcttcgagctcgtggcgaagttcgcgggttac
ggcttcaacaagagccacgccgccgcctatgcgctcgtcgcttatcaaaccggctggatg
aaggcgaagtacccggtcgagttctacgcggcctcgatggcctatgatatcgcgctcacg
gacaagctcagcgtcttcatagacgatatgaagcgcatgggcgtggagtgcctgccgccc
tgtatcaacaacagcgaggccgacttttcggtggaggacggcaaggtgcgttatgcgctc
gccggcctcaaaggcgtcggcgagcgagcgatggagggtattgtcgaggtccgcgaggcg
ggcggcacgtttaagtcgctgaccgactttgcagagcgcatcgatcccacgctgcttaac
aagcggcagatcgaaagcctcgtttcgggcggtgcgttcgattgtgtggagtccaaccgc
gccaaggcccatgcaatggcggaggccgttctggcggcggcgaacgcggcggcggatgcg
cggaagacgcaccagggcgcgctgttcggcggggcagggggcggcgcatccatcactctc
atggcgcccggcagcgtttcggagtggtcgctgggtgacacgatggcgaaggaacgcgac
gcgttcggcttctacttcgccgcacacccgctttcggcttggcagcatgtgctcgatacg
catggcgcgcgctcctttgcgcgcgtttgcgaggacggcccaccgtgggacggcgggcgc
ggcagcgcgacgatggcggggctcgtcgagtctgtgcgctggcgcacgccccagaacgga
cgcagcacgcgctaccttctcgccagcctgtcggactcgggcggtcagtacgttgcaagc
tgctttgacgaagaggtgatgcccgcgcttgaagccgctgccgcagcgcaggaggtgatc
ctcattaacgctgagctgctgtggcgcgatggtgaagaggcgccgcgcgtcacgatcagg
gggcttacggcagtcgctgaactgtcgaagcacagccgtggacgcctcactctcaaggtc
tcgccgagtttcgacgctgccgcgctgcgacgccttgccgacgcacagccagtggggcgc
ggcgacatcttcgccgagatagaactgcccgacggtttcgcctcgatccgcgtcgcccat
gggctgctgctggattctgaaatgcgccataccgctgaacgcatcgcaggcgtgacctca
gcgtctctcgtcgccgtaagctga
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