Streptococcus milleri: NCTC11169_00007
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Entry
NCTC11169_00007 CDS
T09563
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smie
Streptococcus milleri
Pathway
smie03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11169_00007 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smie03400
]
NCTC11169_00007 (trcF)
Enzymes [BR:
smie01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11169_00007 (trcF)
DNA repair and recombination proteins [BR:
smie03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11169_00007 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
Glyco_transf_36
Motif
Other DBs
NCBI-ProteinID:
VEE10888
LinkDB
All DBs
Position
1:5265..8759
Genome browser
AA seq
1164 aa
AA seq
DB search
MDIIELFNQNKQIADWQRNLSKSTRQLLMGLSSSTKAVTMASCVEENHKILILTSTYSEA
ERLSSDLIGLLGEEKVYTFLADDTPLAEFVFSSQEKIFSRLEALDFLLDSQQSGFLIVNV
AASQLFLPDPVNFNSAYIDLKIGQEYELKDLIHQLSNSGYKQVSQVFNQGEFSLRGDILD
IFERSSQIPFRVEFFGDEVDGIRLFNPENQISIQNVEHVHIHPATDIIVTKADYKNAQKK
IENLIEKTVDLTLKSYLEEVLANIKEQTQHADIRKLLSYFYQNEWTILDYLPKHSPIFFD
DFQKIMNRHAKFQLEVANLLTEDLQNSKAVENQSYFVDVYSIFRKYKPATFFSNFHKGLG
NLKFDSLYQFNQYPMQEFFSQFQLLKEEISRYKKSNYTVIIQSNSLLTLQSLHKSLQEYE
IPLDYVNDTKIHKHAVQLVEGRLIQGFNFVDEKIVLITEYDILQKKVKRKVRRQSISNAE
RLKNYNELEKGDYVVHNVHGIGRYLGIETIEISGIHRDYLTIQYQNADRISIPVDQIHLL
SKYVASDGKAPKINKLNDGRFQKTKQRVQHQVEDIAEDLIKLYAERSQLKGFAFSSDDSY
QQEFDNDFPYVETEDQLRSIKEVKKDMESDHPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAILVPTTVLAQQHYTNFKERFNDFPINIEVLSRFKSKSEQKIILEKLKKGQVDIIIG
THRLLSKDIVFADLGLIVIDEEQRFGVKHKEKLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNATVIRDAVLREMDRGGQVYYLYNKVDTMEQKVSEL
KELIPEASIGYVHGQMSEILLENTLLDFINGEYDILVTTTIIETGVDIPNVNTLFIENAD
YMGLSTLYQLRGRIGRSNRIAYAYLMYRPDKILTEISEKRLETIKGFTELGSGFKIAMRD
LSIRGAGNILGSSQSGFIDSVGFEMYSQLLEEAIAKKQGKEKRRQKGNAEINLQIDAYLP
SDYITDERQKIEIYKRIREIDNRVNYEELQNELIDRFGEYPDVVAFLLEIGLVKSYLDQA
FVQLVEKKQQSVIVRFEKVSQQFFLTQDYFEALSVTNLKARISENKGLIEVIFDVKNKKD
YEILEGLLQFSEKLVEIKNQKKNC
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggatattattgaattatttaatcaaaataaacagatagctgattggcaaagaaatcta
agtaaatcaactcggcagttattaatgggtttgtcatcttcaactaaggctgttacaatg
gcctcttgtgtagaggagaatcacaaaattttgattttaacgtctacttatagtgaagca
gaaagactttctagtgacttgattggattgttgggagaggaaaaagtatatacatttctt
gcagatgatactccgttagctgagtttgtcttttcttctcaagaaaagattttttctcgt
ttagaagctttagattttttattagattctcaacaatcgggatttttgatagttaatgtg
gcagctagtcaactatttttacccgatcctgttaatttcaattcagcttatattgatcta
aaaatagggcaagaatatgaattaaaagatttgattcatcaattgtcaaattcgggttat
aagcaagtatcacaagtgtttaatcaaggggaattcagtcttcgtggtgatattttagat
attttcgagcgctctagtcaaataccttttcgggttgaattttttggtgatgaagttgat
ggtattcgtctatttaatcctgaaaatcaaatttctattcaaaatgtagaacatgtgcat
attcatcctgctacagatatcatagttactaaagcagattataaaaatgcacagaaaaaa
atagaaaatcttatagaaaaaactgttgatttaacgttgaaatcctatttagaggaagtt
ttagctaatataaaagaacaaactcagcatgctgatattagaaaattattgtcttatttt
tatcaaaatgaatggacaattcttgattatcttccaaaacatagcccaattttctttgat
gattttcaaaaaattatgaatagacatgctaagtttcaattagaagtagcaaatttattg
acagaagatttacaaaatagtaaagcagttgaaaatcaatcttattttgtagatgtttat
tcaatatttagaaagtataaaccagctaccttcttttccaattttcataaaggactggga
aatttaaaatttgattctctttatcaatttaatcagtatcctatgcaggaattttttagt
caatttcagcttttgaaagaagaaatcagtcgctataaaaaatctaactacacagttatt
atacaatcaaattctttattgactttacaaagtttacataaaagtttacaagaatatgaa
attccacttgattatgttaatgatactaaaattcataaacatgctgttcaattagtagaa
ggacgtttaattcaaggatttaattttgtagacgaaaaaattgttttaatcactgaatat
gatattctgcaaaaaaaagtaaaacgaaaagttcgcaggcaaagtatttctaatgctgaa
cgtttgaaaaattataatgagctggaaaaaggagattatgttgttcataacgttcatgga
attgggcgatatttaggaattgagacgattgaaatttcaggaattcatcgtgattatctc
actattcaatatcaaaatgcagatcgtatttctattcctgttgatcagattcatctactt
tctaaatatgttgcaagtgatggtaaagcgcctaagatcaataaattaaatgatggacgt
tttcaaaaaactaaacagagagtacaacatcaagttgaagacattgctgaggatttaatt
aaactttacgcagagagaagtcaattaaagggatttgcgttttctagtgatgattcttat
cagcaagaatttgataatgattttccttatgtagaaacagaagatcagttgcgttctata
aaagaagttaaaaaagacatggaaagtgatcatcctatggaccgtcttttagttggggat
gttggttttgggaagacggaagtagctatgagagctgcttttaaagcagtaaatgatcat
aaacaagtggcaattttagttcccactacggttttagctcaacagcactatacgaacttt
aaggagcgttttaacgattttcctatcaacattgaagtattaagtcgttttaaaagtaaa
tcagaacaaaaaataattttagaaaaattaaaaaaagggcaggtggatattattattgga
acgcatcgtctcctgtcaaaagatattgtatttgctgatttaggactcattgttattgat
gaggagcaacgttttggagttaagcataaagaaaaattaaaagagttgaaaacaaaagtt
gatgttttaactttgacggcgacccctattcctcgtacactccatatgtctatgttaggt
atacgtgatttatcagttattgaaactcctccaacaaatcgctacccagttcaaacttat
gttttagaaaataatgcaacagttattcgagatgcagttttaagagaaatggatcgagga
ggacaggtttactatctttacaataaagttgacacaatggagcaaaaagtttcagaattg
aaagaattgattccagaagcttctattggatatgtacatggtcaaatgagtgaaattctt
cttgaaaatactttacttgattttatcaatggggaatatgatattttggtgacaacgact
attattgaaactggtgttgatattcctaatgttaatactctttttattgaaaatgcagat
tacatgggattgtcaactttatatcaattaagagggcgtattggtcgtagtaatcgtatt
gcttatgcctatctcatgtatcgtcctgacaagattttgacagaaatttctgaaaaacgt
ttggaaactataaaaggatttacagaattaggctctggttttaaaattgctatgcgagat
ttatctattcgtggtgctggaaatattttaggaagttcacaatctggttttattgattct
gttggctttgaaatgtattctcaattattagaagaggctattgctaaaaaacaaggtaaa
gaaaaaagaaggcaaaaaggaaatgctgaaattaatttgcagattgatgcctatcttcct
agcgattacattactgatgaaaggcagaaaattgagatttacaaacgtattcgcgagatt
gacaatcgtgtaaattatgaagaattacagaatgaattgatagatcgttttggagaatat
ccagatgttgttgcctttttattagaaattggccttgtaaagtcttatttagatcaagct
tttgtccagcttgttgaaaaaaagcaacaatctgtgattgtccgatttgaaaaggtttct
caacagtttttcttaactcaagattactttgaagctctttctgtgacaaatttaaaagca
agaatttcagaaaataagggattgattgaagttatatttgatgtaaaaaataaaaaagat
tatgaaattttagaaggacttttgcagttttcagaaaaattagtagaaattaaaaatcaa
aagaaaaattgctaa
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integrated database retrieval system
