Salvia miltiorrhiza (redroot sage): 130986502
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Entry
130986502 CDS
T09291
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130986502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
smil03041
]
130986502
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130986502
Spliceosome [BR:
smil03041
]
Complex C
Other components
Step II factors
130986502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
AAA_16
ABC_tran
nSTAND3
Sigma54_activ_2
TsaE
Flavi_DEAD
PhoH
T2SSE
GIPC1_GH2
Motif
Other DBs
NCBI-GeneID:
130986502
NCBI-ProteinID:
XP_057765918
LinkDB
All DBs
Position
1:complement(46051009..46056341)
Genome browser
AA seq
1199 aa
AA seq
DB search
MGAEVEADGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITEMGRNCETVDEFDVKLKE
NGAEMPDYFVRTLLTIIHAILPPKQKSKSEKGSKEGDNESFSALKIKDGRERVKELEKEI
EEEAKSRRRLEGDDEEDRYGNRDRDGDRRERKRDRDRDRDRERDRERVRHGDREDRGRHR
GREERGVGGDRDGYGDERGRQRHGDRDRNRGGERNWRNEYDEERDDGNRETRKGKDSQSD
EPELYKVYKGRVSRVMDKGCFVQFHDFKGKEGLVHVSQMATRRISNAKDVVKRDQEVYVK
VISVSGSNLSLSMRDVDQNSGKDLLPLKRSETDDGLSANPSGRNDGGGMGSRIGLSGIRI
TEEVDAVPSRRPLKKMSSPERWEAKQLIASGVMSVKDYPMFDDEGDGMLYQEEGGEEELE
VELNDDEPAFLQGQSRYSIDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTML
DSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQ
EQRQSLPIYKLKKELVQAVHENQLLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPR
RVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTSPETVIKYMTDGMLLREILIDEDLSQY
SVIMLDEAHERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPG
RTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDVLLFLTGQEEIDYACQCLYERMKG
LGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGF
AKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAFHNEMSPTTVPE
IQRINLGMTTLNLKAMGINDLLSFDFMDPPTPQALISAMEQLYSLGALDEEGLLTKLGRK
MAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPE
GDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKN
FQKIRKAIGAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTK
EYMREVTVVDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgggggcagaagtcgaagctgatgggctgaagaagctagagtatttatcgttagtttca
aaagtatgtacagagctggaaacccatttaggttttggggataaagtgctggcggagttc
atcacggagatgggtaggaattgtgagacagtggacgaattcgatgtcaaattgaaggag
aatggagcagagatgcccgattattttgtccgcacgcttcttaccattattcacgcgatt
ttgccgccgaagcaaaagtcgaaatcggagaagggatcaaaggagggggataatgagtcc
ttttcagctttgaagatcaaggatggtagagagagggtgaaggagctggagaaggagatt
gaagaggaggcgaaaagccggaggagattggagggggatgatgaagaagataggtatggg
aatcgggacagagatggtgataggagagagagaaaacgtgacagagatagagatagagat
agagagagggacagggaaagggttagacatggggatagggaggaccgaggtagacataga
ggtagggaggagaggggtgttggtggagatagggatggttatggcgatgagagaggcagg
caaaggcatggtgacagggataggaatcgaggaggagaacggaattggaggaatgaatat
gatgaagagagggatgatgggaacagagagacaaggaaggggaaagatagccagtcggat
gagccagaattgtacaaagtttacaaaggaagggtttcgagggtgatggataaggggtgt
tttgttcagtttcatgatttcaaagggaaagagggcctggtacatgtgtctcagatggca
accaggaggatttcgaatgccaaggatgtagtgaagcgagaccaggaggtctatgtgaaa
gttatctcggttagtgggagtaatttgagtttgtcaatgagggatgtggatcagaacagt
ggaaaggatttgttgcccttgaagaggagtgagactgatgatggattgtcggccaaccct
tcgggtaggaatgatggtggagggatgggaagtaggattggtctgtcaggtatcaggata
actgaggaagttgatgccgtgccatcgcggagaccactaaagaagatgagttctcctgag
cgatgggaggctaagcaactcattgcttctggtgttatgagcgtaaaggactatcctatg
tttgatgatgagggagatgggatgctttatcaggaagaaggaggagaagaggagcttgag
gttgagttgaatgacgatgaacctgctttcttgcagggtcaaagtaggtattccattgac
atgtcgcctgtgaagatattcaagaatcctgaggggtctttgagccgtgcagcagcactt
caatctgctctgataaaagaaaggagggaagttagggaacaacaacagcggactatgctg
gattccattccaaaggatctgaatcggccttgggaagacccaatgccagaaacaggtgag
aggcatcttgctcaggaactgagaggtgttggcttgtctgcatatgacatgccggagtgg
aagaaggatgcatatgggaaagctcttacttttggacaaagatcaaagctttccattcag
gaacagagacaaagtttacccatctataagttgaagaaggaactggttcaggctgttcat
gaaaatcagctcctggttgttattggtgaaacggggtcaggcaagacaacacaggtaacg
cagtatctcgctgaggcaggttacactactaagggaaaaattggatgcactcagcctcgt
agggtggctgcaatgtctgtggcaaagagagttgctgaggaatttggttgtcgtctgggt
gaagaggttggatatgcaatccgttttgaagattgcaccagtccagagactgtaatcaag
tacatgacagatggtatgcttctgagggagattctgattgatgaagatttatctcagtac
tcggtgataatgcttgatgaagcccatgagaggaccattcatacagatgtcctttttgga
ttgttgaagcaacttgtaaaacgaagacctgaccttcgtctgattgtcacgtctgcaact
ttggatgcggagaagttttctggatatttcttcaactgcaacatcttcaccattccaggt
agaacttttccagtagaaatactgtacaccaagcagccggaaagtgattacctggatgcc
tcattgatcaccgtgttacagattcacttgactgaacctgaaggtgatgtacttcttttc
ttgactggtcaagaagagattgattatgcttgtcaatgtctctatgagagaatgaagggt
ttgggtaaaaatgttccggagctgatcattttacctgtatacagtgctctacctagtgaa
atgcagtccaggatttttgatcctgctcctccaggaaagaggaaagttgttgtagcgacc
aatatagcagaggcttcattgactattgacggcatattttatgtcattgatcctgggttt
gcgaagcaaaatgtgtacaatcctaaacaagggcttgactcattggtgataactccaatc
tcgcaagcatctgctaaacaaagggcagggcgagctggacgtacaggaccgggaaagtgc
tatcgtctctatacagagagtgcattccacaatgagatgtctcccacgacagttccggag
attcaaaggattaatcttggaatgactactcttaatttgaaagctatgggtattaatgat
cttttgtcttttgattttatggacccccctacacctcaggctctcatttctgccatggag
cagctatacagtttaggagctctggatgaagagggtcttcttactaaattgggtaggaaa
atggctgaattcccgttggatcctccgctgtccaaaatgcttcttgctagtgtggatctt
ggttgcagtgatgaaattctgaccattattgcaatgattcaaactggaaatatattctac
cgaccacgagaaaaacaagctcaagcagatcaaaaaagagcaaaatttttccagcctgaa
ggtgatcatttgactctacttgctgtttatgaggcatggaaagcaaaaaatttctcaggg
ccatggtgctttgagaattttgttcagtcacgatcattgaggagggcacaggatgtgaga
aagcagcttctctcgatcatggacaagtacaaactggacgttgtgagtgctggtaagaat
tttcaaaagatacggaaagctataggtgctggtttctttttccatgctgctaggaaggat
ccacaagaaggctatagaacacttgttgagaaccaaccggtttatatacatccaagcagt
gctttgttccaaagacaacccgactgggttatttaccacgagttggtgatgactactaag
gagtatatgcgtgaggtgactgtcgtagatccaaagtggctggttgaactagctccaagg
ttcttcaaagtgtcagatccaacgaaaatgagcaagcgcaagagacaagagcgtattgag
ccactctacgacagatatcatgaaccgaactcgtggcgtttaagcaaaaggcgtgcttag
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integrated database retrieval system
