Salvia miltiorrhiza (redroot sage): 130987186
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Entry
130987186 CDS
T09291
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03015
mRNA surveillance pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130987186
09122 Translation
03013 Nucleocytoplasmic transport
130987186
03015 mRNA surveillance pathway
130987186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130987186
03041 Spliceosome [BR:
smil03041
]
130987186
03009 Ribosome biogenesis [BR:
smil03009
]
130987186
03012 Translation factors [BR:
smil03012
]
130987186
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130987186
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130987186
mRNA cycle factors
Stress granule specific factors
130987186
Spliceosome [BR:
smil03041
]
Complex C
Other components
EJC/TREX
130987186
Ribosome biogenesis [BR:
smil03009
]
Eukaryotic type
90S particles
Helicases
130987186
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
eIF-4
130987186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
AAA
Helicase_RecD
PhoH
AAA_22
CMS1
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
130987186
NCBI-ProteinID:
XP_057766817
LinkDB
All DBs
Position
5:50249690..50253201
Genome browser
AA seq
409 aa
AA seq
DB search
MAAAAAQRGGGGGRRAMEEDDAKLVFETSKGVEPIMSFDEMGIKEELLRGIYNYGFEKPS
AIQQRAVLPIISHRDVIAQAQSGTGKTSMIALAVCQIVDTKSSEVQALILSPTRELASQT
EKVILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRSIK
ILILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNF
TVSSMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcggcagctcagagaggcggcggcggggggcggcgggcgatggaggaagac
gacgcgaagctcgtgttcgagacgtcgaaaggcgtggagccaatcatgagcttcgacgag
atggggataaaggaggagctcctccgaggaatctacaattacggcttcgagaagccttcc
gccattcaacagcgcgccgttcttccgattatctcccaccgcgacgtcatagctcaggcg
caatccggtactggaaagacttcaatgattgccctcgctgtttgccagattgtcgatacc
aagtcatccgaggtccaagccttgattttatctcctactagagagttggcttctcaaaca
gagaaagtgatactggcaattggtgactatataaatgtacaagctcatgcttgtgttgga
ggcaagagtgtgggtgaggatataagaaaactagagcatggagttcaggtggtgtcaggc
actcctggtagagtttgtgacatgatcaaaagaagaactttgcggactagatcaatcaaa
atattgattctggatgagtctgatgaaatgttgagcagaggatttaaggatcagatttat
gatgtctacagataccttccacctgacctgcaggttgtcttaatctctgccaccctccca
aatgaaatattggagattacaagtaaattcatgacagatccagttcgcatcctagtaaag
cgtgatgaattgactctggagggtatcaagcaattctttgttgcagttgaaagagaagaa
tggaaatttgatacgctatgtgatttatacgatacccttaccataacccaggcagttata
ttttgcaacacaaagcgcaaggttgattggctgacagcaaaaatgcgtgagaataacttt
actgtctcatccatgcatggagatatgcctcaaaaggagcgagatgcaatcatgggtgaa
ttccggtctggccagactcgtgtgcttatcacaacagatgtttgggctaggggtttggat
gttcagcaggtttctctggtgattaattatgatcttccaaacaatcgagagctctacatc
catagaattggacgatctggtcgttttgggcgaaagggtgttgccataaactttgttaaa
agtgatgacatcaagatccttagagatattgagcaatattacagtacacagatcgatgaa
atgcctatgaacgtggctgatttgatttaa
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