Salvia miltiorrhiza (redroot sage): 130987555
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Entry
130987555 CDS
T09291
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
smil03036
]
130987555
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130987555
microRNA pathway
RISC loading complex
130987555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
Helicase_C
DEAD
DND1_DSRM
ResIII
dsrm
PAZ
IstB_IS21
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130987555
NCBI-ProteinID:
XP_057767113
LinkDB
All DBs
Position
6:219666..234840
Genome browser
AA seq
1631 aa
AA seq
DB search
MYGGESSVAAANGISERLLTLSLDGDEEQQISAKPEKDPRKIARKYQLDLCKKALEENVV
IYLETGCGKTHIAVLLIYEMGHLIKKPQKNICIFLAPTVALVQQQAKVIANSIDFKVGIY
CGTHVKSLHYWKKEVEENEILVMTPQILLHNLSHCFIKIELIALLIFDECHYAQLDSNHP
YAEIMKIFYKMDVVKLPRICGMTASPKSGKGGSIDGLEALLRAKVYTVEDKDELEKFVTS
PKVNVYYYSSGDRSSLPHMIYTRKLEEIKNQSMSAVRINSLDQSIHRSTKKLLQKLHCNL
IFCLENLGLWGVLQASHIFLKGDHYENTDVVEEESSSDSNVCNKYLHQVVSVLASDCAGD
GKEADLSSVEVLKEPYFSKKLLRLIAILSSFRLQPNMKCIIFVNRIVTARSLSHILRNLK
FLSAWKCGFLVGVHAGLVSRKNTNIILDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFD
LPETVASFIQSRGRARMPQSEYAFLVDRGNRKELDLIEHFKKDEAMMNEEISLRKSSIPI
TSFDERTYKVDTTGATISSIMSISLLHHYCSKLPHDEYFHPKPQFFYYDDTDGMVCTIIL
PANAPIHQIVSSPQSSTEAAKKDACLRACKALHEIGALTDYLLPEQDDKHEELTQDLSDS
DVSIEEDSRAELHEMLVPAALRKPWTAAGISTYFSCYYIEICPTPADREYRRFGLFMKEP
LPEGAGEMKVELCLARGRMVRSQLIPCGVTRFHRDEIADAEMVQKMFLQIILDRHKFVSE
YVSLKNDDVSNSSSSTFYLLLPIEPAKHGSISVDWALIRRCLSSPIFKLPHLDVGDQTSQ
SSKYLHLANGHFSSDDVVDGLVYVPCSNIFFFISDVYWEKSGRSLHGYSNDHVQHYKEKF
DIHLAYPDQPVLKAKQLFVLDNLLRKKKLSEEWREKEEHFIELPPEICQLKVIGFSKDIG
SSLSLLPSIMHRLESFLVAIELKNKLAESFPEGAEVTTARVLEALTTERCSESFSLERLE
VLGDAFLKFAVGRCLFLKHDASDEGQLTRKRSNIVNNSNLLKLATRKKLQVYIRDQSFEP
DKFYAFGRPCPINCTKETQENIHSQDYCKNNDRNSGVRCNRCHHWLYNKTIADALEALTG
AFIVDSGFKSATAFLNWIGVEVDFTLPKIDNICSASESFLPLSSRMDVEALENLVGYKFS
HKGLLIQAFVHPSFNNLLGGCYQRLEFLGDAVLDYLITSYLYSVYPSLKPGHLTDLRSAC
VNNTSFADVAGKWSFHKFIICDSSVLREAIAKYINIGKSGTGKEHIEEKTCPKVLGDLVE
SFTGALYLDTGFDLKLVWKTMLFLLDPIISITKMQCNPLREINELCQSYNWELQFSSSKK
DNKFTVEAKVDEKNVSASALATNISGKVAKRVASRQLFECLKAQGYKTKLPSLEEVLTKS
EAREAKLIGYDETPSTGTANSGGVEVLEDSDSEDAAKDYQLRNISTLKSKPISRPIELPS
HRKPPEVRVTQPLRNSCRSGLPTAKLSNGSSVDSNGKGAPTNVSAKSRLYELCTSNCWRP
PVFECCQEVGPSHLKEFLFKVMLEMEEMPNEAFEFYGELRARKKDAAETAADAALWYLEH
EGYIWDRNHDK
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcggcgaatcctccgtcgccgcggccaacgggatttctgagcggcttttgact
ctatcgctcgacggcgacgaggaacagcagatttcagccaagccggagaaagacccgaga
aagatcgctagaaagtaccagttagacctctgtaaaaaggccttggaggagaatgtcgta
atttatctggaaacaggttgtgggaaaacccatattgctgttctacttatatatgagatg
ggacaccttattaagaaacctcagaagaacatatgcatttttcttgcccctacagttgct
ttggttcagcagcaagccaaggtcatagcaaattctattgatttcaaagttgggatctat
tgcggaacgcatgtaaagagtctccattactggaagaaggaagttgaggagaatgagatc
cttgttatgaccccacagatacttcttcacaatttgtctcactgctttatcaagattgag
ctgattgcccttctgatatttgatgaatgccattatgcacaacttgatagcaatcatcct
tatgctgaaattatgaagatcttctacaaaatggatgtcgtgaaacttcctcgtatttgt
ggcatgactgcatctccaaagtcaggaaaaggtggctcaatagatggtcttgaggcattg
ttgcgagcaaaggtttatacagttgaagacaaggatgaactggaaaaatttgtcacatcc
cccaaagtgaatgtgtattattatagttcgggtgatcgctcgtctttgcctcacatgatt
tacactaggaaacttgaggagataaagaatcagtctatgtcagcagttcggataaattca
cttgatcagagtattcacaggagcaccaaaaagttgcttcaaaagctgcattgcaatttg
atcttttgtctagaaaaccttggactatggggagtattacaggccagccatattttcctg
aagggtgatcattatgagaataccgacgttgtggaagaagagagttccagtgacagtaac
gtgtgcaacaaatatttgcatcaggttgtgtcagtccttgcttctgattgcgctggagat
ggcaaggaagctgatctgtcctctgtcgaagttttgaaagagccttacttctcgaaaaag
ctcttacggcttattgcaattttatccagctttaggttacagcctaatatgaagtgcatt
atatttgtcaatagaattgttactgcaagatccctctcacatatacttcgaaacttgaag
ttcttatcagcttggaagtgtggtttcctcgtgggagtgcatgctggacttgtatcacgt
aaaaacacaaatatcattcttgataagttccgttctggggagctaaatctattagttgca
acaaaagtgggtgaagagggacttgatattcagacatgttgccttgtaatacgtttcgat
ctaccagaaacagttgcaagttttattcaatcaagaggccgtgcccgtatgccccagtcc
gaatatgcatttttggtggataggggcaaccggaaggaacttgatttgatcgaacacttt
aaaaaggatgaagctatgatgaacgaagaaatttcattgagaaaatctagtattccgata
actagtttcgacgagagaacctataaagtggatactactggggcaacaattagttctata
atgagtatctcattgctgcatcattattgttcaaaactgcctcatgatgagtactttcat
ccaaagccccagtttttctactatgacgatacagatggaatggtttgcaccataattctc
ccagccaatgctcctatccatcaaattgttagttcaccacaatcttcaactgaggcagct
aagaaagatgcctgtttgagagcatgcaaggctctacatgaaattggagcactgactgac
tatctcttgccggagcaagatgataaacatgaggaattgactcaagacttatctgattct
gatgtcagcattgaagaggattcgcgagcagaattacatgagatgcttgttccagctgcc
cttaggaaaccatggacagcagcagggatctcaacttactttagttgttactacattgag
atttgtcctactccagcagatagagagtacagaagatttggccttttcatgaaagagccc
ctcccagaaggggctggagaaatgaaggttgaactttgtttggctcgtggtagaatggtg
aggtcgcagcttattccatgtggagttactagatttcatagagatgagattgccgatgct
gaaatggtgcagaaaatgtttctccaaattattcttgaccggcataaatttgtatcggaa
tatgtgtcactaaaaaatgatgatgtctctaactcaagctcgtcaactttttacctattg
cttcctattgaaccggcaaaacatggcagcatctctgtggactgggcactaattaggaga
tgtttgtcatctccaattttcaaacttccacaccttgatgtgggtgatcaaacttctcaa
agtagcaagtacttgcatcttgccaatggtcactttagctcagatgatgttgtggacggt
ttggtgtatgtcccatgcagcaatatatttttctttatttcggatgtttattgggagaaa
agtggacgtagcttacatggttattcaaatgaccatgtgcagcactataaggagaagttt
gatattcatcttgcataccctgatcagcctgttttgaaagccaaacaactttttgttttg
gacaacttattgcgaaagaaaaaactttcagaagaatggcgagaaaaggaggaacacttt
attgaattgcctccggagatttgtcagttgaaagttattggtttctctaaggatatcggg
agctcattgtctctgttaccatcaatcatgcatcggcttgaaagctttctcgtggccatt
gagttgaagaacaaattagctgaatctttcccagagggagcagaagttactactgctcgt
gttcttgaagcactcacaacagagagatgctctgaaagcttttctcttgaaagacttgaa
gtgcttggagatgcatttcttaagtttgcagtcggcagatgtctcttccttaagcatgac
gcgtcagatgaagggcagctgactagaaaacgctccaacatcgtgaacaactctaatcta
ctcaagcttgcaacgaggaagaaattacaggtctacattcgagatcaatcatttgagccc
gacaaattctatgcatttggtcgtccttgccctataaattgcacaaaggaaactcaggaa
aacattcactctcaagattattgcaagaacaatgacagaaattctggagttagatgcaac
agatgtcatcactggttatacaataagacaattgcagatgctcttgaggcactcacagga
gcttttatagttgatagtggctttaaatcagcaactgcatttcttaactggattggcgta
gaagtagattttactctcccaaaaattgataatatctgctccgccagtgagtcatttctt
cctctttcgagtcggatggatgttgaagcccttgaaaatctggtaggttacaaattttcc
cacaagggtttgctcattcaggcattcgttcatccatctttcaacaatcttttgggaggt
tgctaccagagacttgagttcctcggagatgctgtcttggattatttgatcacttcctat
ctatattctgtctatccgagcttaaaacctggccatttaacagatttgagatcagcatgc
gtgaacaacacttcatttgctgatgtggctggaaaatggtcctttcacaaatttattatc
tgtgattctagtgttctccgtgaagcaatagctaaatacattaacattggtaaatcagga
acagggaaagagcacatagaagagaaaacatgtccgaaggtccttggcgacttagtggag
tcttttacaggtgccctatatcttgacacagggtttgatttgaaacttgtctggaagacg
atgctcttcttgctggaccctattattagtattacaaagatgcagtgtaatcctctgaga
gaaattaatgaactttgccaatcctataactgggaactgcagttttcttcgtcaaagaaa
gacaataaatttacagttgaagctaaagtggatgaaaaaaatgtttctgcctcagcttta
gctaccaacattagtggaaaagttgccaaaagagtagcttcaagacaattatttgaatgc
ttgaaggctcaaggttacaagacaaagttaccatcgcttgaggaagttcttacgaagagc
gaggcgagggaagccaaattgattggatatgatgagacaccctctactggaactgctaat
tctggtggcgtagaagtgctagaagattctgatagtgaagatgctgcgaaagattatcaa
cttaggaatatatcaactcttaagtccaagcccatttccagacctattgagcttccttcg
catcgcaagcccccagaagtccgtgttacacaacccctgagaaatagttgccgaagtggt
cttcctaccgccaaattaagtaatggctcaagtgttgactcgaatggaaaaggtgctccc
accaatgtatcggcaaaatcacgtctatatgaattatgtacttctaactgctggagacca
cctgtctttgaatgctgccaagaggtcgggccaagccacttaaaggaattccttttcaag
gtcatgttggaaatggaagaaatgccaaatgaggcattcgagttctacggggaacttcgg
gccaggaagaaggatgcagcggagacagcagcagatgctgcactttggtacttggaacat
gaagggtatatatgggatagaaatcatgataagtga
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