Salvia miltiorrhiza (redroot sage): 130987912
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Entry
130987912 CDS
T09291
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130987912
03015 mRNA surveillance pathway
130987912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130987912
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130987912
mRNA cycle factors
P-body specific factors
130987912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Vps8_C_schizo
Xpo1
Motif
Other DBs
NCBI-GeneID:
130987912
NCBI-ProteinID:
XP_057767597
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All DBs
Position
6:2784964..2796676
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AA seq
1191 aa
AA seq
DB search
MEHAEDIAGEQPEKHDDERRHDDEEAVARLEEFKKSVEAKMALRQSNLNPERPDTGFLRT
LDSSIKRNTAVIKKLKQINDEQREGLMDELRGVNLSKFVSEAVAAICDAKLKSADIQSAV
QICSLLHQRYKEFAPSLVQGLLKVFVPGKSVEDPDADKNSRAMKKRSTLKLLLELYFVGV
VEDTGIFVNIIKDLTSPEHLKDRDATQTNLSLLASFARQGRFLLGFPLTEQDILEELLKG
LNITADQKKFFRKAFQTYYDAAVELLLSEHASLRQMEHENAKILNAKGELSEENATSYEK
LRKSYDHLSRGVSSLAEALDMQPPVMPEDSHTTRVTSGEDASSPVASKDSPTLEALWDDD
DTRAFYECLPDLRAFVPAVLLGEAESKSNEQSSKTQDQSADTAPESDKGQVVMQVNPEVS
ADSTIVQEDKEGKDNDKEEKDKEKAKDSDKEKGKEKDAGRGEIEKDKTKGLDGTNLEALL
HRLPSCVSRDLIDQLTVEFCYLNSKSTRKKLVRVLFNVPRTSLELLAYYSRMVATLSTCM
RDVSSMLLQLLEEEFNTLINKKDQMNIETKIRNIRFIGELCKFKIAPASLVFSCLKACLD
DFTHHNIDVACNLLETCGRFLYRSPETTVRMSNMLEILMRLKNVKNLDPRQSTLVENAYY
LCKPPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEEYLLKCFLK
VHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRVGLELNEYGMEQQRIAYMRFL
GELYNYELVDSSVIFDTLYLILSFGHGTTEQDTLDPPEDCFRIRMVITLLETCGHYFDRG
SSKRKLDRFLIHFQRYILSKGVLPLDVEFDLQDLFVELRPKMIRFSSVEEVNAALFDLEE
LERRVSTEKAHSEKYSDSEKTPRRTSSGTLSVNGQSPGNGTEENGELHEDDVGETDSDSG
SGTIENIDRDDEETDQDEVGESEDEYDDGRDPASDEDDEVRVRQKVAKVDPLEVADFDRE
LRALMQESLDSRKLELRSRPTINMMIPMNLFEGPVKEHHGRGTEGESGDETTDEGTGGSK
EVQVKVLVKRGNKQQTKQMYIPRDCSLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEEL
NGGMQPLNSSHSGGRVSNRGHSWDGQHRSGGGPRHRHIYHSGAGVYYGRRR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggaacacgctgaagatattgccggagaacaaccggagaaacatgatgacgagcgaaga
cacgatgacgaggaagccgttgcccggcttgaggaatttaagaagtcagttgaagcgaaa
atggctttgcgtcaaagtaatttgaaccctgagaggcctgacactggctttctcaggaca
ctagactctagtatcaagcgcaatacagcagtgattaaaaaattaaagcaaatcaatgat
gagcagcgagaaggtctaatggatgaattgcgtggtgtgaatttaagcaaatttgtcagt
gaagccgtagctgcgatctgtgatgcaaagcttaaatctgctgatatacagtctgctgta
cagatttgttctttgctccatcagaggtataaagaatttgctcctagtcttgttcaaggc
ctcttaaaagtttttgtgccgggaaaatctgttgaggatcccgatgcagacaaaaattca
agagccatgaagaaacggagtaccttgaagcttcttttggagctttactttgttggggtt
gtagaagatactggtatatttgtgaacatcattaaggatcttactagcccagagcattta
aaggatcgtgatgcaacacagacaaatttgtcccttcttgctagttttgcccgacaagga
aggtttcttcttggatttccattaactgagcaagatattcttgaagagcttctcaaggga
cttaatattacagccgatcagaaaaaattcttccggaaggctttccagacttactatgat
gctgctgtggaacttcttctatctgaacatgcttcacttcgccaaatggagcatgaaaac
gcaaagattttgaatgccaaaggtgaattgagtgaggaaaatgccacttcatatgaaaag
ctgcgaaaatcatatgaccatctaagccgtggtgtctcatctctagcagaagcacttgat
atgcaacctcctgtgatgccagaggatagtcatactaccagagtcacatcaggggaggat
gcatcatctcctgtagccagcaaagattctcccactcttgaagctctgtgggatgatgat
gatactagagccttctacgagtgccttccagatcttagagcttttgttcctgcggtgttg
cttggagaggctgaatcgaagtcgaatgaacaatcttcaaagacccaagaccagtcagct
gacacggctccggagtcagataaaggtcaagttgttatgcaagtaaatcctgaggtttct
gcagattctacaattgtacaagaggataaagagggtaaagacaatgataaagaagaaaag
gacaaggagaaagccaaagactctgacaaagagaaaggtaaggagaaggatgctggaaga
ggagaaatcgaaaaggataaaaccaaaggtcttgatggaactaacctcgaagctttgcta
catagacttccaagctgtgttagccgtgatctgattgaccagctcacagttgagttttgc
tatcttaactcaaagtctactaggaaaaagcttgtgagagtattgttcaatgttccaaga
acatctctagagttgttggcttactactcacggatggttgctacactgtctacttgtatg
agagatgtatcatcgatgctcttacagttgttggaggaagagttcaatactttaattaat
aagaaggatcaaatgaatattgaaacaaaaatcaggaatatacgatttattggagaactt
tgcaagtttaaaattgctcctgccagcttggtttttagctgtctaaaggcttgtttagat
gatttcacgcaccataatatagatgtcgcttgcaatctccttgagacatgtggtcgcttt
ctctaccggtcccctgagaccactgttcgcatgtcaaacatgctagagatactgatgcgc
ttaaaaaatgttaagaatttggatccccgtcaaagcaccttggtggaaaatgcttattac
ttgtgtaaaccaccagaaagatctgcacgggtctccaaagttcgtcctcctttacatcag
tatattaggaaactacttttctcagatcttgataagtcctccattgagcatgttctacga
cagctgcgcaagctaccttggagtgaatgtgaggagtatcttttgaagtgttttctgaag
gttcacaaagggaaatacggtcagattcatttgattgcatcacttactgctggtctgagt
cgctatcatgatgaatttgcagttgccgttgttgatgaggttttggaggaaattagagtg
ggtttagagttaaatgaatatggaatggagcaacaacggattgcatacatgcgtttcttg
ggggaactgtataactatgaacttgttgactcatctgtcatctttgatacgctctatctg
attctttcttttggacatgggacaacagagcaagatacattggatcctccagaggactgt
tttcgtatcagaatggtcatcacacttcttgagacatgtgggcattattttgatagaggt
tcatcaaaaaggaagcttgatcggttcttgatacacttccagaggtatattctgagcaaa
ggtgtccttcccctggatgttgaatttgatctgcaggatttatttgttgaattgaggcca
aagatgatccgtttttcatcagttgaggaggttaatgctgctctatttgatctcgaagag
cttgagcgcagagtttcaacagagaaagctcacagcgagaagtactcagactcggaaaaa
actccccgtaggacgagttctggtactctatctgtcaatggacaaagtcctggtaatggc
acagaggaaaatggtgaattgcacgaagatgatgttggggagacggatagtgattctgga
agtggcaccattgaaaacattgatcgtgatgatgaagaaactgaccaagatgaggttggt
gaaagtgaagatgaatacgatgatggacgcgatcctgcttcagatgaagacgacgaggtt
cgtgttaggcagaaggtggccaaggtagaccctctggaggtggctgattttgaccgggaa
ctgcgggctctaatgcaggaaagtttggattcaagaaagctagagctgcgctcgcggcca
acaataaatatgatgatacccatgaatttgttcgaaggccccgtcaaggaacaccatgga
agaggaactgaaggtgaaagcggtgacgagacaacagatgaagggactggtggaagcaag
gaagtccaggtgaaggtgcttgtgaagcgcggtaacaagcaacagacaaagcagatgtac
atccctcgcgactgctctctcgtgcagagcacaaagcaaaaagaagcagccgagctagaa
gagaaacaagacataaagcgtctcgtcctagaatacaacgatagagaagaggaggaactg
aacggaggtatgcagccactaaactcgtctcatagtggaggtagagtgtcaaacaggggc
cattcatgggatgggcagcataggtctggaggagggccgcgtcatcgccatatataccat
tccggtgccggtgtttactatggcagaagaagataa
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