Salvia miltiorrhiza (redroot sage): 130987979
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Entry
130987979 CDS
T09291
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
130987979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smil03021
]
130987979
03036 Chromosome and associated proteins [BR:
smil03036
]
130987979
Transcription machinery [BR:
smil03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
130987979
Coactivators
SAGA/TFTC/STAGA complex
130987979
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
130987979
STAGA complex
130987979
TFTC complex
130987979
SAGA complex
130987979
SLIK complex
130987979
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
DSE1_N
Beta-prop_Aladin
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_EIPR1
ASA1
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_WDR75_1st
Beta-prop_DCAF4
PAC11
Beta-prop_NOL10_N
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Cytochrom_D1
Beta-prop_HPS5
Tricorn_2nd
Beta-prop_NWD2_C
Beta-prop_ACSF4
WD_LRWD1
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
130987979
NCBI-ProteinID:
XP_057767695
LinkDB
All DBs
Position
6:3509111..3519404
Genome browser
AA seq
669 aa
AA seq
DB search
MDQEEIDKVVLAYLDKRGFKQAGLALQQEKQQHGKGSNASSTAQIDPDIAKQILSFAEVD
GPAQYQEGYSKLRSWAYSSLDQYQHELVRVLYPVFIHAFMDLVAKGHIQEARSFFNSFRG
DHEVMHTRDLQKLEGVLSPSHLEEMEFAHSLRQSKVGIKICQYSYDLLLQYLHKSQSITM
LGVVNEHINFQVSPGQPNSIADDAEYVTFFGSDQDAANLINQKEIHWGLLEDSLEERLEK
TGAPNMDSEKADGEAREGELEENKKRSDGGKQGTTPKKLKKDKVVGATAKAHRSDSIAAS
GAPRVKPELALPVIPVEVEQSILEDLRNRVQLSSMALPSISLYTFLNTHDSLNCASISHD
GSMVAGGFSDSSLKVWDMAKLGQQNVTSPSQGENELAANEPSSSSGGRSYTLFRGHAGPV
HSATFSPFGDFILSSSSDSTIRLWSSKLSANLVCYKGHNYPVWDVQFSPLGHYFASASHD
RTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYLATGSSDKTVRLWDVQSGECVRIFI
GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVAPFVGHGSCIWSLAFSCEGSLL
ASGSADCTVKLWDVATSSRVPKSDENGKNGSTSRLRSLKTLPTKSTPVYALQFSRRNLLF
AAGALSKQS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaccaagaagagatcgataaagtggttctggcgtacttggacaagaggggtttcaag
caagctggcctcgctcttcagcaagagaagcagcaacacggcaaaggcagcaacgcctcc
tccactgcacagattgatcctgatattgctaaacaaatcctctctttcgctgaagtggat
ggtcctgctcagtaccaagaaggttatagcaagctacggtcatgggcttatagttctctg
gatcagtaccagcacgagttagttagagtcttgtacccagtatttatccatgcatttatg
gatcttgttgcgaagggtcatattcaagaagctcgatctttttttaatagctttcgagga
gaccatgaagtcatgcatactcgtgaccttcaaaagttagaaggtgttctttctccctca
catctggaggaaatggaatttgcacattctctaagacagagcaaagtgggcatcaagata
tgccaatactcctatgacctacttctacaatacttgcacaaatctcaatcgattacaatg
cttggagttgtcaatgaacacatcaactttcaagtttctcctggacaaccaaactccatt
gctgatgatgctgaatatgtcacattttttggaagtgaccaggatgctgctaatttgata
aaccagaaagaaattcactgggggttgcttgaagattctttggaagaaaggttggaaaag
acaggggctcctaatatggattccgaaaaggcagatggagaagcgagagaaggtgaactg
gaagaaaataagaaaagatctgatggtggcaagcaaggcactacacctaagaagttgaaa
aaggataaggttgttggtgctacggcaaaagctcatcgttcagatagtattgctgcgtct
ggagcaccacgtgtaaaacctgagctagcattgccagtaatacctgtagaggtggaacag
tctatccttgaagatttgagaaaccgtgtgcagttgagtagcatggcattgccttccatt
agcttatatacttttctcaacactcatgacagcttgaattgcgcttcaatatctcatgat
gggtcaatggtagctggtggattttcagattcatcattgaaggtttgggacatggcaaag
cttgggcagcagaatgtaacctctccttcgcagggtgaaaatgagctggctgccaatgag
cctagctcaagttctgggggaagaagttacacattatttcgaggtcatgctggacctgta
cattctgccacttttagtccatttggggatttcattctgtcttcttcatcagattcgaca
atccgactgtggagttcaaaattgagtgcaaatcttgtctgctacaagggtcacaattac
cctgtatgggatgtacagtttagtccacttggccactattttgctagtgcttcacatgat
cgcacggcaaggatctggtcgatggacagaatacagcctctcaggattatggcaggtcat
ttatctgatgtggattgcgtgcaatggcatgcaaattgcaactatcttgctaccggatct
agtgacaaaacagtgcgcctatgggatgtccagagtggcgagtgtgttagaatattcatt
ggtcacagaagtatgatcttaagtttggcgatgtcacctgatggtcgctatatggcatct
ggcgatgaagatggtacgataatgatgtgggatctcgcatctggtcgctgcgttgcccca
ttcgtcggccatggctcttgcatttggtcactggctttcagctgtgaaggctcgctgcta
gcttccggttctgctgattgcactgtgaaattatgggatgtagctacaagctcaagagtg
ccaaaatcagatgagaacggcaaaaatgggagcacgagcagactgagatcactgaaaact
ttgcccaccaaatctactcccgtctacgctctgcagttctccagaagaaaccttttattt
gctgccggcgctctctcaaagcagtcgtag
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