Salvia miltiorrhiza (redroot sage): 130988429
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Entry
130988429 CDS
T09291
Name
(RefSeq) THO complex subunit 6 isoform X1
KO
K13175
THO complex subunit 6
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03013
Nucleocytoplasmic transport
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130988429
09122 Translation
03013 Nucleocytoplasmic transport
130988429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130988429
03041 Spliceosome [BR:
smil03041
]
130988429
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
130988429
Spliceosome [BR:
smil03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130988429
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WDR55
Beta-prop_WDR41
Beta-prop_EML_2
EIF3I
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_ACSF4
Beta-prop_NUP159_NUP214
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WD40_CFAP43
Beta-prop_TEP1_C
CBP_CCPA
Motif
Other DBs
NCBI-GeneID:
130988429
NCBI-ProteinID:
XP_057768242
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All DBs
Position
6:complement(8466820..8472785)
Genome browser
AA seq
368 aa
AA seq
DB search
MGVAQQMDCRNWEEDSYRDAILQDRETLSRTVFRTAYAPNPNPNPNSDHVVTASSDGSVA
AYSIFACLEMGCGRSRDRNWLAAEPEFVIRGHDGPAYDVKFYDDSLLLSCGDDGRIRGWK
WKEILESMESERGAKMKPVFDLVNPQHKGPWGALSPIPENNAIAVDSQSGSIYAAAGDSC
AYCWDMEKCQVKMVFKGHSNYLHCIVSCNSSNQIITGSEDGTARIWDCKSGKCIQVINPE
KQGTSASFPCVSCIALDSSESWLVCGKGQSLSLWNLPARECVSVARTQASVQDVTFDENQ
ILAVGAEPLLTRLNMNGDIISQIECAPTSAFSISLHPSGVAAVSGYGALVDMISQFGSHL
CTFRCKGL
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgggagtggcacaacaaatggattgcagaaattgggaggaagattcctacagagacgcc
attttgcaagatagagaaaccctctctcggaccgttttccggaccgcctacgctccaaac
cctaatcccaatcccaattccgaccatgtcgtcaccgcctccagcgacggctccgtcgcc
gcttactccattttcgcctgcctcgagatgggctgcggacgctcgagagatcgaaattgg
ttagctgcagagccagagtttgtgattcgaggacatgatggaccggcttatgatgttaaa
ttttatgatgattctttgttgctgagttgtggtgatgatggtcgaattcgagggtggaaa
tggaaagaaattttagaaagcatggaatctgagcgaggagccaagatgaagccagtattt
gacttggtgaatcctcaacataaaggtccctggggtgctctttctcctattccagaaaat
aatgctattgctgtagactctcagagtggatctatatatgcagctgctggtgattcttgt
gcatattgttgggatatggagaaatgccaggtcaagatggtttttaaaggacattcaaac
tatctacattgtatcgtttcgtgcaattcgagtaatcagattattactggttcagaagat
ggcacagcacgtatatgggattgcaaaagtgggaagtgtattcaagtaattaatccagaa
aaacaaggcacaagcgcttcttttccatgtgttagctgtattgctcttgattctagtgag
agttggttggtttgtggaaagggccagtctttatcactttggaatcttcctgcccgtgaa
tgcgtttcagttgctagaactcaggcttctgtccaagatgttacatttgatgaaaatcaa
attctagctgttggagcagaaccattactcacacgattaaacatgaatggagatattatt
tcacagatcgagtgtgctccaacatctgcattttccatttctttgcacccttcaggggta
gcagcagtatctggttatggagcgctcgtagacatgatctcacaatttgggagccacttg
tgtacatttcgctgtaaggggctgtaa
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integrated database retrieval system