KEGG   Salvia miltiorrhiza (redroot sage): 130988429
Entry
130988429         CDS       T09291                                 
Name
(RefSeq) THO complex subunit 6 isoform X1
  KO
K13175  THO complex subunit 6
Organism
smil  Salvia miltiorrhiza (redroot sage)
Pathway
smil03013  Nucleocytoplasmic transport
smil03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:smil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130988429
  09122 Translation
   03013 Nucleocytoplasmic transport
    130988429
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:smil03019]
    130988429
   03041 Spliceosome [BR:smil03041]
    130988429
Messenger RNA biogenesis [BR:smil03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     130988429
Spliceosome [BR:smil03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    130988429
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WDR55 Beta-prop_WDR41 Beta-prop_EML_2 EIF3I Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_EIPR1 Ge1_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_ACSF4 Beta-prop_NUP159_NUP214 Beta-prop_Nup120_160 Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd WD40_CFAP43 Beta-prop_TEP1_C CBP_CCPA
Other DBs
NCBI-GeneID: 130988429
NCBI-ProteinID: XP_057768242
LinkDB
Position
6:complement(8466820..8472785)
AA seq 368 aa
MGVAQQMDCRNWEEDSYRDAILQDRETLSRTVFRTAYAPNPNPNPNSDHVVTASSDGSVA
AYSIFACLEMGCGRSRDRNWLAAEPEFVIRGHDGPAYDVKFYDDSLLLSCGDDGRIRGWK
WKEILESMESERGAKMKPVFDLVNPQHKGPWGALSPIPENNAIAVDSQSGSIYAAAGDSC
AYCWDMEKCQVKMVFKGHSNYLHCIVSCNSSNQIITGSEDGTARIWDCKSGKCIQVINPE
KQGTSASFPCVSCIALDSSESWLVCGKGQSLSLWNLPARECVSVARTQASVQDVTFDENQ
ILAVGAEPLLTRLNMNGDIISQIECAPTSAFSISLHPSGVAAVSGYGALVDMISQFGSHL
CTFRCKGL
NT seq 1107 nt   +upstreamnt  +downstreamnt
atgggagtggcacaacaaatggattgcagaaattgggaggaagattcctacagagacgcc
attttgcaagatagagaaaccctctctcggaccgttttccggaccgcctacgctccaaac
cctaatcccaatcccaattccgaccatgtcgtcaccgcctccagcgacggctccgtcgcc
gcttactccattttcgcctgcctcgagatgggctgcggacgctcgagagatcgaaattgg
ttagctgcagagccagagtttgtgattcgaggacatgatggaccggcttatgatgttaaa
ttttatgatgattctttgttgctgagttgtggtgatgatggtcgaattcgagggtggaaa
tggaaagaaattttagaaagcatggaatctgagcgaggagccaagatgaagccagtattt
gacttggtgaatcctcaacataaaggtccctggggtgctctttctcctattccagaaaat
aatgctattgctgtagactctcagagtggatctatatatgcagctgctggtgattcttgt
gcatattgttgggatatggagaaatgccaggtcaagatggtttttaaaggacattcaaac
tatctacattgtatcgtttcgtgcaattcgagtaatcagattattactggttcagaagat
ggcacagcacgtatatgggattgcaaaagtgggaagtgtattcaagtaattaatccagaa
aaacaaggcacaagcgcttcttttccatgtgttagctgtattgctcttgattctagtgag
agttggttggtttgtggaaagggccagtctttatcactttggaatcttcctgcccgtgaa
tgcgtttcagttgctagaactcaggcttctgtccaagatgttacatttgatgaaaatcaa
attctagctgttggagcagaaccattactcacacgattaaacatgaatggagatattatt
tcacagatcgagtgtgctccaacatctgcattttccatttctttgcacccttcaggggta
gcagcagtatctggttatggagcgctcgtagacatgatctcacaatttgggagccacttg
tgtacatttcgctgtaaggggctgtaa

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