Salvia miltiorrhiza (redroot sage): 130988667
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Entry
130988667 CDS
T09291
Name
(RefSeq) uncharacterized protein LOC130988667
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130988667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130988667
03041 Spliceosome [BR:
smil03041
]
130988667
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130988667
Spliceosome [BR:
smil03041
]
Complex B
Other components
Prp19-related factors
130988667
Complex C
130988667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21_C
PPR
Motif
Other DBs
NCBI-GeneID:
130988667
NCBI-ProteinID:
XP_057768560
LinkDB
All DBs
Position
1:complement(48642797..48647304)
Genome browser
AA seq
908 aa
AA seq
DB search
MSISQELYPTEEDYLYEEEVLRNPNNLKLWWRYLIARSDAPFKKRAIIYERALKALPGSY
KLWHAYLRERLEIVRNLPITHSQYQTLNNTFERALATMHKMPRIWIMFLQSLTHQKLITR
TRRSFDRALCALPVTQHDRIWECYLVFVSQKGVPIETSLRVYRRYLKYDPSHIEDFIEFL
INSELWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHASEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLLEKARDIFEEGMTTVITVRDFSVIFDAYSQFEDSML
SIKLETMDDSDEDGNEDDREEEEEEDDRLDIEKLRKRIGCFWLKDDKDVDLRLARFEHLM
DRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLW
VAFSKLYETHKDVSNARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNLKGALELMRR
ATAEPSAEVKRRVAADGNEPVQMKVHKSLKLWTFYVDLEESLGTLESTRAVYERILDLRI
ATPQIIINYAMLLEEHKYFEDSFKVYERGVKIFKYPHVKDIWVTYLSKFVERYGKSKLER
AREIFEKAVEEAPAESVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKLGMYEIY
IARAADIFGLPKTREIYEQAIESRLPDKDVKVMCLRYAELEKNLGEIDRGRALYKHASQF
ADPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQMQTL
DEAKDVLKKAGVADDEMAALERQLLPTTNETNTKDAGRRLGFVSAGLQQNGETTANQEDI
ELPEESESEDEEKVEIAQKEVPDAVFGGLVRKRDEADEKGKEATDTENKENDGHLGALER
IKRMRRGA
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttctcaggagctctatcccaccgaagaggactacctctatgaagaagaggtg
ctccgaaaccctaacaatctcaaattgtggtggcgatatctaatcgcgcggagtgacgcg
ccgttcaagaagcgcgccattatctacgagcgagctcttaaagccttgcccggaagctac
aagctgtggcacgcctatctccgcgagcgcctcgagattgtgaggaatttaccgattact
cactcgcagtatcagacgctgaacaacactttcgagcgggcgctcgcgacgatgcacaag
atgccgcgcatttggatcatgtttttgcagtctttgacgcatcagaagttgattactcgg
acgcggcgctcatttgaccgtgcattgtgcgcgctgccggttactcagcacgaccgaatt
tgggagtgttatctggtcttcgtgtcgcagaagggtgtgccgatagagacttcgttaagg
gtgtataggaggtacttgaagtatgatccgagtcatattgaggattttattgagttctta
attaattcggagttgtggcaggaggctgcagagaggttagcgggggttttgaacgacgac
cagttttactctataaaggggaagacgaaacatagactgtggttggaactgtgtgatttg
ttgactcagcacgccagtgagatatcgggattgaatgtagatgcgataattagaggaggg
attaggaagttcacagatgaggtggggagactttggacatctttggcagattattatatt
agaaggggccttcttgagaaggccagggatatctttgaggaggggatgaccacagtaatt
acagtgagggatttcagtgttatatttgatgcatattcgcaatttgaggacagtatgttg
tcaatcaaattggaaactatggatgacagtgatgaagatgggaatgaggatgacagagag
gaggaggaagaggaggatgataggttggatattgagaagttgaggaagaggattggctgt
ttttggttgaaggatgacaaggatgtggatttgcggttggctaggtttgagcatctgatg
gacaggaggccagagttagctaacagtgttcttttgaggcagaaccctcacaatgtggag
cagtggcatcggagagttaagctttttgaagggaaccctacaaaacaaattttgacttac
acagaagcagtgaggaccgtggatcccatgaaggctgtgggaaaaccacatactctgtgg
gttgcattttctaagttgtatgagactcataaagatgtttcaaatgcccgggtgattttt
gataaggctgtgcaggttaattataaggctgtagaccatctagcaagcatttggtgcgaa
tgggcagagatggagctcagacacaaaaatttaaagggtgcactagaactgatgcgacgt
gctactgcagagccatccgccgaggtcaagaggagagtggctgctgatggaaacgaaccg
gtgcaaatgaaggtgcataaatccctcaagctttggacattttatgtggatttggaggaa
agcttgggtaccttggagtcgactcgtgcagtttatgagagaatattggatctgagaata
gctactccccagattatcataaactatgcaatgcttctagaagaacataagtactttgaa
gactcatttaaagtttatgagagaggtgtaaaaatatttaagtatccgcatgtgaaagat
atttgggtcacatatctttccaaatttgttgagagatatggaaaatcaaagctggaacga
gctcgagagatctttgagaaggcagttgaagaggctcctgcagaatctgtgaaacctctg
tatcttcaatatgctaagttggaggaagactatggtctggctaaaagagcaatgcgggtg
tatgatcaggctacaaaagccgtcccacctaatgagaaattgggcatgtatgaaatatac
attgccagggcagctgatatatttggtttgccaaaaactagggagatttatgagcaagct
attgaatcacgactgccagacaaggatgtaaaggtcatgtgtttaagatatgctgaactt
gagaagaaccttggtgaaattgatcgtggtcgtgcattatacaagcatgcatcgcagttt
gctgacccaagatctgatcctgatttctggaacaagtggcatgaatttgaagtgcagcat
ggaaatgaggatacattccgggagatgctccgaatcaaaagaagtgtttcagctagttat
agccagacgcattttatcctaccggagtatttgatgcaaaaggaccagatgcagaccctc
gacgaagctaaggatgttctcaagaaagcaggtgtggccgatgatgaaatggctgcactt
gagaggcaattactgcccactaccaatgaaaccaacactaaagatgctggtagacgacta
ggattcgtgagtgctggtttgcagcagaatggagagacgacggcaaatcaggaggatatt
gagcttccagaagaaagtgagtcagaagatgaggagaaggtcgagatagcacagaaagaa
gttcctgatgcagtatttggaggattggtgcggaagagagatgaagcggacgagaaaggt
aaagaagcaactgatacagaaaacaaagagaatgatggtcatctaggtgccttagagaga
atcaaacggatgagacgaggcgcctag
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