Salvia miltiorrhiza (redroot sage): 130990199
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Entry
130990199 CDS
T09291
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130990199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130990199
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130990199
mRNA cycle factors
Common to processing body (P body) and stress granule
130990199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
130990199
NCBI-ProteinID:
XP_057770407
LinkDB
All DBs
Position
6:16352930..16358941
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AA seq
977 aa
AA seq
DB search
MTLLMDNNKDNPSRERVQQLFNKNVELENKRRKAAQARIPSDPNTWQNMRENYEAILLED
HAFSEQHDIEYALWQLHYRRIEELRALFNAAALASAGSPASQNGKGTVRAGPDRLTKIRS
QFKTFLSEATGFYHDLMLKIRSKYGLPLGYSSDDPENQIPMSKDGNKSSEGKKGLMSCHR
CLIYLGDLARYKSLYGEGDSKARDFAAASSYYLQASSIWPSSGNPHHQLAILAGYSNDEL
LSIYRYFRSLAVDIPFVTARDNLIIAFEKNRQSYSQLLGDGKAPAVKMQPARVPGKGKGK
GELRPALKENKSVASAIKERAPNKSELFKAFITKFVRLNGILFTRTSLEIFPEVFSMVKN
DLLELLSSGPDDEFNFGSDAAECRLAVIRMIAVMIFTGHNVSRESENQSYADILQRSVLL
QNAFTATFEFVGCILERCNQLADPSLSYLLPGIMVFVEWLACRQDFAVGSELEEKQVSAR
SFFWNECIMFLNKLLSSGCVSITEDEDETCFSNMSKYDESETANRLALPEDFELRGFHPL
LPAQLILDFSRKHLFGGDGGSRERISRVKRIIAAGKALANVVRVGPEGVYFDDRMKKFVF
GVEPQTSDDHFLSSHLEPNVNDNLLDISAEGRMALAALPKIEVGMEAEDEDEVIVFKPPT
TERLMDEFSSKLTSPEIFASAGGASKVDFGNEKGSISAVQDGFLLQSALTAGKKSSPTVF
NTVANGTYQYQQPVQPSTSTWSAKQLPIVNGLAQLNLMENGSSLKSDLQDKFGVYQHVSV
SMPYPQFVNAGPSHNYPVVIPQASVPSKFDSIIPSGSSIDGLAVKPSLVMPPGSKKNPVS
RPVRHFGPPPGFGSVPSKVVDEPLFNSMPQNETSIPQIDDYSWLDGYQLSSSNHGVGFSN
SANINVSTGISTFPFPGKQVPIQVQSDNQKGWQEHPFSEQMLHYEEQHRELQKGNQQHGL
PQQQYQGQSLWEGRFFV
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgctgatggataacaacaaagataatccttccagagagcgtgttcaacaacta
ttcaacaagaatgttgagttggagaacaagcgaaggaaagcggcgcaggcaagaatccct
tcagatcctaacacatggcagaatatgcgtgaaaattatgaagcaattctccttgaagac
catgctttttctgaacaacacgatatagaatatgctctatggcaattgcattataggagg
attgaggagctaagggccctcttcaatgcagcagctctagcttcggcaggatcacctgca
tcccaaaatggtaaagggacagttcgtgctggacctgatcgacttacaaagattcgttcg
caatttaagaccttcctttccgaggctactggattttatcatgatttgatgttgaagata
agatctaagtatgggctcccattgggatattcttctgatgatccggaaaatcagatccca
atgtcaaaagatggaaataaatcttcagaggggaaaaaaggcttgatgtcctgtcatcgt
tgtttaatctatttgggtgatctcgctcgttacaaaagcttatatggcgaaggcgattct
aaagcccgggattttgcagctgcatcaagttattacttgcaagcttcctcaatatggcct
tcaagtggtaatccacatcatcagcttgccatactggctggatattcgaatgatgaactg
ctgtcaatatatcgctattttcgaagtctagcagtggatatcccatttgttactgcaaga
gacaacttaatcattgcatttgagaagaaccgtcagagttattcccaactgcttggtgat
ggtaaagcacctgctgtgaagatgcaacctgcaagagtgcctggaaagggaaagggaaaa
ggggagttgaggcctgctttaaaggagaataagtcggtagctagtgcaatcaaggaaaga
gctccaaataagtctgaactcttcaaagcttttattacaaaatttgttaggttgaatggc
attctcttcacgcgcacaagcctggaaatctttcccgaagtgttctctatggttaaaaat
gatttattggaactactttccagtgggccagatgacgagttcaactttggttcagatgct
gctgaatgtagacttgcagtcattagaatgattgcagttatgatattcactggtcataat
gtgagcagggaaagtgaaaaccagtcctatgctgatattctacaacgctctgtcctgctt
caaaatgcttttactgctacatttgaatttgtgggctgcattcttgagcggtgcaaccag
ttagctgatccctcattaagctatttgctacctgggattatggtgtttgtggaatggttg
gcgtgtcgtcaggattttgctgttggcagtgaattggaggagaaacaagtgagtgcaaga
tcttttttctggaacgaatgcataatgtttctgaataagctcttgtctagtggttgtgtg
tcaattactgaagatgaagacgagacgtgtttttcaaatatgagcaagtatgacgaaagt
gaaactgctaatcgtcttgcattacctgaggattttgagttgagaggattccatcctctt
cttcctgcccaactcatccttgatttttcaaggaagcacttatttggaggtgatggaggc
agcagagagaggatttcacgtgtaaagaggattatagcagctggaaaggctcttgctaat
gttgtccgagttggcccggagggagtatatttcgacgacaggatgaaaaagtttgtcttt
ggtgttgaacctcagacttctgatgatcattttctctccagtcatttggaacctaatgtg
aatgataacttgctagatatttcagcagaaggccgaatggctctggctgccttgccaaag
atagaggtgggtatggaagcagaggatgaagatgaggtgatagtatttaagcctccgact
actgaaaggcttatggatgagttttcttcaaagttgacttctccagagatttttgcttct
gccggtggggctagcaaggttgattttggtaatgaaaagggatctatctccgctgtgcag
gatgggtttctcttgcagagtgcattgactgcaggcaagaaatcttctccaactgttttt
aacactgttgctaatggcacttatcaatatcagcaacctgtccaacctagcacatcgacg
tggtcagcaaaacaattgcctattgtgaatggcttggcccagttgaacttgatggaaaat
ggatcctcactgaagtctgatctgcaagataagttcggagtttatcaacatgtgtctgtt
tccatgccttacccccaatttgtgaatgctggtcctagccataactatcctgttgtgatt
ccacaagctagtgtgccttctaagtttgattccatcataccttctggatcatccattgat
ggtctggccgtcaaaccatcattggtcatgccacctggctcaaagaagaatccagtgagt
cgacctgttagacactttggtccaccacctggttttggttctgttccttccaaggttgtg
gatgaaccattgttcaacagcatgccccaaaatgaaacttcaattcctcaaatagatgat
tacagctggttagatggctatcagctgtcttcatccaatcatggtgttgggttcagtaat
tctgcaaatatcaatgtctcaacgggaatttctaccttccctttccctgggaagcaggtg
ccgatacaagtgcagagtgataatcagaaaggctggcaggagcatcccttttcggaacag
atgctgcactatgaggagcagcatagagaacttcagaaaggaaaccaacagcatggcttg
ccgcagcagcagtatcaaggacagtcactttgggaaggtcgtttctttgtgtga
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