Salvia miltiorrhiza (redroot sage): 130990315
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Entry
130990315 CDS
T09291
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Pathway
smil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130990315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130990315
03012 Translation factors [BR:
smil03012
]
130990315
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130990315
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130990315
Translation factors [BR:
smil03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130990315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
dsrm
DEAD
AAA_22
AAA_16
T2SSE
nSTAND3
AAA_19
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
130990315
NCBI-ProteinID:
XP_057770517
LinkDB
All DBs
Position
6:complement(18817534..18830042)
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AA seq
1198 aa
AA seq
DB search
MPFSSMFLQNFFKPKLTAMSLAHLTCPTKSWSSAVTAYRRLHNLYPRTQSRNLLTGFVFS
CYASSSSSSSSSSSVVVRRSRNAASTFSSPQFYQHNLGYGRFAYDEYASEESDCEVQSSS
KQLGSSTLDNVEDWQWKLTTLLRRKDEQEMVSREKKDRRDFEQLSALATRMGLHCRQYDR
VVVFSKVPLPNYRSDLDSKRPQREVVLPFGLQKEVNSHLRAHLARKAVNKENLHNAYPAS
NVGQSQLIDEGLEEQEVSSTKSVIAERILQRRSLQMRNKQQDWQESLEGQKMLDFRKSLP
SHEARETLLHAISQNQVVVVSGETGCGKTTQLPQYILESEIEASRGAACSIICTQPRRIS
AIAVAERVAAERGEEIGESVGYKVRLEGMRGRDTRLLFCTIGILLRRLLVDRNLKGVTHV
FIDEIHERGMNEDFLLIVLKDLLPRRPELKLILMSATLNAELFASYFGGAPAIHVPGFTY
PVRNYFLENILETTGYRLTPYNQIDNYGQDKLWKMQKQGLRKRKTQIASAVEEALMVADF
REYSPRVRESLSCWNPDSIGFNLIENVLCHICRKERPGAVLVFMTGWDDINSLKQQLEAH
PLLGDPSKVLLLACHGSMSSAEQKLIFNKPEDGVRKIVLATNMAETSITINDVVFVVDCG
KAKETSYDALNNTPCLLPSWISKASARQRKGRAGRVQPGECYHLYPRCVHDAFADYQLPE
LLRTPLQSLCLQIKSLQLGSISEFLAKALQPPEPLSVQNAVEYLKMIGALDEKENLTVLG
RHLSMLPVEPKLGKMLIYGAIFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSA
RGFSDHLALVRAFDGWKNAEREQSGYEYCWRNFLSTQTLRAIDSLKKQFQYLLKDIGLVE
NFESCNICSHDEHLVRSVICAGLFPGICSVVNKERSISLKTMEDGSALLHSNSVNAQEAR
IPFPWLVFNEKIKVNSVFLRDSTGVSDSVVLLFGGNVSSGGLDGHMKMLGGYMEFFMKPE
LATMYLSIKKELGELVQKKLSNPKLDIKSHNELLTAVRLLVSEDRCEGRFVFGRQMPTSA
KKFEKEIQLGSKNVGGSNAKSHLQTLLARAGHQPPSYKTKELKNNKFRSTVMFNGLDFVG
QPRGSKKEAEKDAAAEALTWLTGDSQSSQKTVEYMSAILKKSKKNQNQNQEHSSTRWR
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgcctttctcctccatgttcctccaaaatttcttcaaacccaagctcacagctatgtct
ctggcccatctcacatgtcccacaaaatcgtggtcctccgctgtcacggcgtaccgcagg
cttcacaatttgtacccaagaactcaaagtaggaatctgctgacaggcttcgttttttcc
tgctatgcttcatcttcatcttcgtcttcgtcttcgtcttctgttgtggtgaggcgcagc
agaaatgctgcttctacgttttcttcgccacaattttatcagcacaatttgggctacgga
aggtttgcttacgatgagtatgcgtccgaggagtccgactgcgaagtccagtcttcgtcg
aagcaattgggttcttccacactcgataatgttgaagattggcaatggaagttgactaca
cttttgcgtcgtaaagatgagcaagagatggtttcgagagagaaaaaagaccggcgtgat
tttgagcagctctcagctcttgcaacaagaatggggttgcactgtcgtcagtatgacaga
gtagttgttttcagtaaagttccactgccaaattatagatctgatttggatagcaagcgt
cctcagagggaggtggtgttaccatttgggttacaaaaggaagtaaattctcatctcagg
gcacaccttgctagaaaggcagtgaacaaagaaaaccttcataatgcttatccagcatct
aatgtgggtcagagtcagttaattgatgaaggacttgaggagcaggaggtatcctcaacc
aaaagtgttatagctgagaggattcttcagcgaaggagcttgcagatgcgcaataaacaa
caagattggcaagaatctttagaaggtcagaagatgctggacttccggaaaagtctccct
tctcatgaagcgagagagacattattgcacgctatttctcaaaatcaggttgttgttgtc
tctggtgaaactggctgtggaaaaactacccaattaccacaatacatcttggagtctgaa
attgaggcctctcgaggagctgcgtgtagtattatctgcacccaacccagacgaatatct
gctatagctgttgctgagagagttgctgctgagcgtggtgaggaaataggagaatctgtt
ggttataaagttcgcctagagggaatgagagggagagatactcgtctccttttctgtact
attggtatccttttaaggagattattggttgacagaaatttaaaaggtgtaactcatgtt
ttcattgatgagattcatgagcgtggaatgaatgaagactttcttctaattgtactgaag
gatcttcttcctcgtcgacctgaattaaaattgattttgatgagtgctaccctaaatgct
gaactttttgcttcctactttggtggtgctccagcaatacatgttccaggatttacatac
cctgttcggaattactttttggaaaatattctagagacgactgggtacagattgacacca
tataatcaaattgataactatggtcaagacaaattatggaaaatgcagaagcagggtctc
aggaaaaggaagactcagatagcttcagctgttgaggaagctcttatggttgctgatttt
agggagtacagccctagagttcgggagtcactctcttgttggaatcctgattcaattggc
tttaatctcattgagaatgtgctctgtcatatttgtcgcaaagaaaggcctggtgctgta
ttagtgtttatgactggttgggatgacataaactctttgaaacagcagcttgaagctcat
ccactgttgggagatccaagcaaagttttgttgcttgcatgccatggttccatgtccagt
gcagaacagaaattgatttttaataaacctgaagatggagtcaggaagattgttctggca
acaaatatggctgaaacaagtatcacaataaatgatgtcgtttttgtggttgattgtggg
aaagcaaaagagacttcttatgatgctctgaataacactccttgtttgcttccttcctgg
atctcgaaggcttctgctcgccagaggaaaggcagagcaggccgtgttcaacctggagag
tgctaccatctatatcccagatgtgtgcacgatgcctttgcagattatcaattgccagaa
cttttgaggacacctttacaatctctatgcttgcaaatcaagagcctgcagcttggaagc
atctcagagttcttagctaaggccttacagccacctgaaccgctctcggttcaaaatgct
gttgagtatttaaagatgattggggctttagatgaaaaagaaaatctgacagtgctcgga
cgccacttgtcgatgcttccagttgagccaaagctcggcaaaatgctcatatatggtgct
attttcaattgcttggatccaataatgaccattgttgctggcctaagtgttagagatcca
ttcttgatgccatttgacaaaaaagaccttgctgagtctgcaaaggcccagttttctgct
cgtggcttcagtgaccatcttgccctggtccgggcctttgatggttggaaaaatgctgaa
agggagcagtctggctatgaatattgctggagaaattttctatctacacaaactctaaga
gccattgattctctaaagaagcagttccagtatctgctcaaagatattggtttagttgaa
aattttgagagttgtaatatatgcagtcatgatgaacatcttgttcgttctgttatatgt
gcgggtctgtttcctggaatatgctctgttgtgaacaaggagaggtcaatatcattaaaa
acaatggaggatggttcggcgcttttgcattcgaattctgtgaacgcccaggaagcccga
attccattcccatggcttgttttcaatgaaaaaatcaaagtcaattcagtattccttcga
gattcaactggtgtatctgattctgtggttctcttatttggaggaaatgtttctagcggc
ggactagatggccacatgaaaatgctgggtggatacatggagtttttcatgaagccagag
ttggctactatgtatcttagcataaagaaagagcttggtgaacttgtccagaagaagctc
tctaatccaaagctggacataaagagtcataatgaacttctaacagcagtgagattgttg
gtgtcagaggaccggtgtgaaggtagatttgtttttgggcggcagatgccgacatctgcg
aaaaaatttgaaaaggagattcaattaggttcaaaaaatgttgggggtagtaatgcaaaa
tctcacctccaaaccttgctcgctagggcaggacaccagccgccttcctataagacgaaa
gaattgaaaaacaacaagttcagatctactgttatgtttaatggtctagattttgttggc
cagcctcgtggtagtaaaaaagaggcggagaaagatgcagctgcagaggctctgacgtgg
ttgactggtgatagccaatcatctcaaaaaactgtagagtacatgtctgccattctgaag
aaaagcaagaaaaaccaaaaccaaaaccaagaacattcttctacaaggtggaggtaa
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