Salvia miltiorrhiza (redroot sage): 130991440
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Entry
130991440 CDS
T09291
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
smil
Salvia miltiorrhiza (redroot sage)
Brite
KEGG Orthology (KO) [BR:
smil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smil03019
]
130991440
03036 Chromosome and associated proteins [BR:
smil03036
]
130991440
Enzymes [BR:
smil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
130991440
Messenger RNA biogenesis [BR:
smil03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130991440
Chromosome and associated proteins [BR:
smil03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
130991440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
UvrD-helicase
AAA_16
DEAD
Cep192_D4
AAA_22
SLFN-g3_helicase
ATPase_2
Motif
Other DBs
NCBI-GeneID:
130991440
NCBI-ProteinID:
XP_057771655
LinkDB
All DBs
Position
7:1570883..1577181
Genome browser
AA seq
1025 aa
AA seq
DB search
MGTIHDKSDDEYSYVGDKGDIGFIDFDNCQSVCSYNPAEESDVVNISVPFPLIEGRKPQS
GIVGETMFDKVTIRNTSEESLDLWSVKIFDSKPEDSFRISLMKPPTAESDPEYIEDYMEL
VTLEERVIRPNQALTIWLSCKPKEIGVHSAAVHFSVGDEVIERILYLLAEDKISKSLSSS
RQYQRRRIKKQNIFNQHAPDAAYVAAQRPSRGPGRGFRHQLPEYPIPVEIRDMLSRHEIP
DPVIEGLTVKNYFAFFKNLLAMEEIKLEEDMQSYSMEGVTMKSKGQMLCLEVPGLAEKRP
SLIAGDFIFAKLASDDETSGIHHQGYIHRVEAEEIILKFAPQFHCSHRDRNLYDVQFNYN
RTNMRRLYQAVEAAQSLERNLLFPSAMYKVRLGQYKALTPIFSDLNEEQMTAVNMILLRK
GGPPYVIHGPPGTGKTKTLIEAILQIYRGDRHARILACAPSNSAADHILDRLINEETVQV
QENEILRLNAFSRPFDDINPDHIDFCSHEDGIFVCPPCKDLEQYRIIVSTYASASILYAG
GILKGHFSYIFLDEAGQASEPEAMVPVSHLQSRNTLLVLAGDPMQLGPVVFSAEAEAHGL
GTSFLERLFECDIYRKGDTTFMTKLVRNYRTHEAILQLPSEMFYAGELIPCKDDKNSSTS
WEGIVPDKGFPLLFIGIQGCDEREGSNPSWFNRIEASKTVEMIKVLIEGKGLKEEDIGVI
APYKKQVTKIREALECLGNPNVKVGSVEQFQGQEREVIIISTVRSTVKHNEFDKVHLLGF
LSNPRRFNVAVTRAKSLIIIIGNPHIICKDPNWNKLLWYCVENNSYKGCFLPKQEVESAQ
AEPYWGENDQPSGSNWDDEGGGWQPSQDQWGEDDSWNQPSSIPWGEEENNHPKPSDVPWG
EEENNPQQSDEENNHPKPSDVPCGEEENNPQPSDEENNHPKPSDVPWGEEENNPQPSDEE
NNHPKPSDVPCGAEENNPQPSDEENNHPKRSNVPWDEEENNLQHSDVRSWGGKDDEFHTT
DVPWE
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaattcatgataagtcagatgatgaatactcgtatgttggagataaaggggat
attggattcattgactttgataattgtcaatccgtttgtagctataaccctgctgaggag
agtgatgttgtcaacatttctgttccgtttcctcttattgaaggaagaaaacctcagtcg
ggaattgttggagaaacgatgttcgataaagttactatcagaaacaccagcgaggagtca
ttagatctatggtctgtgaagatttttgactccaaacctgaggattcatttaggatctca
ctaatgaagcctccaactgctgagtctgatccggaatacatcgaagattatatggaatta
gtaacgttggaggagagagtgatcagaccgaaccaggctttgactatttggttgtcgtgc
aaaccaaaggaaattggcgtgcactcagcagctgtacacttcagtgttggggatgaggtg
atcgaacggatcctttatctgctggcagaagataagatctccaagtctttgtcttcctcg
agacaataccaaagacgtcggatcaagaaacagaacatttttaatcagcatgcacccgat
gccgcatatgttgcagcacaacgcccttcccggggtccaggtcgtgggttcagacatcaa
ctgcccgagtatcctattccagtggaaatccgcgacatgttaagcaggcacgagatccct
gatccagtcattgaggggttaacagtaaagaactattttgcgttcttcaagaatctacta
gcaatggaggagataaagttggaggaagatatgcagtcgtattccatggagggtgtcacc
atgaagagcaaggggcagatgttgtgtcttgaggtcccaggattggctgagaaaaggcct
tcacttattgctggtgacttcatatttgccaagcttgcttccgatgatgaaacttcgggg
attcaccatcagggctacatccatcgagtagaagccgaagaaataatattgaaatttgct
ccacaatttcactgtagtcacagagataggaacctctatgatgtacagttcaactataac
cggacaaatatgcggcggttgtatcaagctgtcgaagctgctcaatctttagaaaggaac
cttctgttcccatctgcaatgtacaaagtgaggctggggcaatacaaagctctcacacct
atattttccgacctgaacgaggagcaaatgacggctgttaacatgatccttctccgcaaa
ggaggccctccgtatgtcatccacggccccccgggtacgggcaaaacaaagactcttatt
gaagctatccttcaaatttaccgtggagatagacatgcccggattctagcctgtgcacct
tcaaatagtgcagctgaccatatactagataggctgatcaatgaggaaaccgttcaagtt
caggagaatgagatccttcggcttaatgcattctcacgtccttttgatgatatcaacccc
gatcacattgatttttgcagtcacgaggatggcatcttcgtgtgtcctccttgcaaagac
cttgagcagtacaggatcatcgtatctacgtatgcgagtgcctcgattctatatgcagga
ggcattctgaaaggtcatttttcatacattttcctagacgaggctggccaagcttctgag
ccggaagccatggttcctgtatctcatctacaatcaagaaatactctcttggttctcgcg
ggagatcctatgcagctaggacctgtagttttctctgcagaagctgaagcacatggactt
ggtacttcatttctggagagacttttcgagtgtgatatctatcgaaaaggagatactaca
tttatgacgaagctagtgagaaattatcggacacacgaggcaatactgcaactcccctca
gaaatgttttatgctggagaattgattccatgcaaagatgacaaaaattcctcaacttcc
tgggaaggcatagttccagataaggggtttcctttgctttttataggcattcaaggctgt
gatgaaagagaaggaagtaatccatcatggttcaacagaattgaagcaagcaagactgtc
gagatgattaaagttttgatagagggaaaagggctcaaagaggaagatattggggtcatt
gcaccttacaagaagcaagtaactaaaataagagaggcgctagaatgtctaggcaatccg
aatgttaaagtgggaagtgtcgaacagtttcagggacaagagagggaagtcattattatc
tcgactgtccgttcaactgtgaaacacaacgaattcgacaaggttcatcttttgggattt
ctgagcaacccaaggaggtttaatgttgctgttacccgagccaaatctttgatcattatc
attgggaatccgcacataatttgcaaggatccaaactggaacaagctcttgtggtattgt
gtggaaaacaactcctacaagggttgcttccttcccaaacaagaggtagagtctgcacaa
gcagaaccttattggggtgaaaatgatcagccatccgggtcaaattgggatgacgaagga
ggcggatggcagccttctcaagatcaatggggcgaggacgatagctggaatcagccatcg
agcattccttggggtgaagaagaaaataaccatcccaagccatctgatgttccttggggc
gaggaagaaaacaatccccaacaatctgatgaagaaaataaccatcccaagccatctgac
gttccttgcggcgaggaagaaaacaatccccaaccatctgatgaagaaaataaccatccc
aagccatctgatgttccttggggcgaggaagaaaacaatccccaaccatctgatgaagaa
aataaccatcccaagccatctgatgttccttgcggcgcggaagaaaacaatccccaacca
tctgatgaagaaaataaccatcccaagcgatctaatgttccttgggatgaggaagaaaac
aatctccagcattctgatgttcgttcttggggaggcaaagatgacgaatttcacacaacc
gatgtgccatgggagtaa
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integrated database retrieval system
